Lates calcarifer (barramundi perch): 108883728
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Entry
108883728 CDS
T04895
Symbol
zgc:110269
Name
(RefSeq) probable flap endonuclease 1 homolog
KO
K04799
flap endonuclease-1 [EC:3.1.-.-]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03030
DNA replication
lcf03410
Base excision repair
lcf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108883728 (zgc:110269)
03410 Base excision repair
108883728 (zgc:110269)
03450 Non-homologous end-joining
108883728 (zgc:110269)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcf03032
]
108883728 (zgc:110269)
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108883728 (zgc:110269)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108883728 (zgc:110269)
DNA replication proteins [BR:
lcf03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
108883728 (zgc:110269)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
108883728 (zgc:110269)
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
108883728 (zgc:110269)
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108883728 (zgc:110269)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPG_I
XPG_N
5_3_exonuc
XPG_I_2
HHH_5
Motif
Other DBs
NCBI-GeneID:
108883728
NCBI-ProteinID:
XP_018532702
UniProt:
A0AAJ7PMQ9
LinkDB
All DBs
Position
LG4:17118631..17123118
Genome browser
AA seq
348 aa
AA seq
DB search
MGITKLAALIRTDAPNAISHKDISYYTGKVIALDTSIIVNQFRAATPMLSPLTGLFFRTL
TFLEHDIKPVFVFDGKPPGEKSAVLEKRAEAAGWRSTNRTGAASSQTKDCLHLLKLLGVP
FIQAPGEAEALCAQLVREGTVDAVASEDMDTLPFGASVLIRQLNAKRDSEVIEYSLPKLL
EKLQINHEEFVDLCILLGCDYCDKISGLGPKRALTLIQKHRTIENVVLHVNRKTHPVPCL
WKYKEARKLFLDVPQTVAPELTWTEPDEEGLVGFLCHAKHVKVERVRRRMERFRQTRDSW
RKEREKEKAEGHSRQTRMEDFFRVTRKREQPKEAADSSSSNRKRPKSK
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atggggatcaccaaactggctgcgttgatccgcaccgatgctcccaatgccatttctcat
aaagatatcagctactacacaggaaaagtaattgcactggatacctccattattgtgaac
cagttccgtgcagcgacacctatgctaagccccctgacaggccttttcttccgtactctc
accttcctggagcatgacataaaaccagtctttgtgtttgacggaaaacctcctggggaa
aagtcagctgttctggagaagcgagctgaggcagctggttggagatccaccaaccgcacc
ggtgcagcatcatcccagaccaaagattgtctccatctcctgaagcttcttggtgttccg
ttcattcaggctccaggggaagctgaggcactgtgtgcccagctggtgagagaggggact
gtggacgcggtggcatcagaagatatggacacactgccgttcggagccagtgttcttatt
cgccaactgaacgccaagagggacagtgaagtaattgaatattctttgcccaagctgtta
gagaaactccaaattaatcatgaggagtttgttgacctgtgtattctgttgggctgtgac
tactgtgacaagataagcggtttgggtcctaagagagctctgacgctgatccagaaacac
cgaactattgagaacgtagttttgcatgtcaacagaaagacccatcctgtgccatgttta
tggaagtacaaagaagcacggaagttattcttggacgtgccacagactgtagctcctgaa
ctcacctggactgagcctgatgaagagggcttggttgggtttctctgtcacgccaaacat
gtaaaagtggagagggtccgtcgtcgaatggagaggttccgtcagacacgggacagctgg
cgaaaggagcgggaaaaggaaaaagcagaggggcatagcaggcaaacccgaatggaggac
ttctttagagttaccagaaagagggagcagcctaaagaagctgcagactcttcgagcagc
aacagaaagagaccaaagtcaaaataa
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