Lates calcarifer (barramundi perch): 108883758
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Entry
108883758 CDS
T04895
Name
(RefSeq) eukaryotic initiation factor 4A-II
KO
K03257
translation initiation factor 4A
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108883758
03012 Translation factors [BR:
lcf03012
]
108883758
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108883758
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108883758
mRNA cycle factors
Stress granule specific factors
108883758
Translation factors [BR:
lcf03012
]
Eukaryotic type
Initiation factors
eIF-4
108883758
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108883758
Exosomal proteins of bladder cancer cells
108883758
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
AAA_22
UvrD-helicase
Flavi_DEAD
NAT10_TcmA_helicase
CMS1
Motif
Other DBs
NCBI-GeneID:
108883758
NCBI-ProteinID:
XP_018532740
UniProt:
A0A4W6FMX3
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All DBs
Position
LG4:17417790..17422839
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AA seq
411 aa
AA seq
DB search
MSSDSADYNSSRDRDHGGPDGMEPDGVIESNWNEITDNFDDMNLKETLLRGIYAYGFEKP
SAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLDIEQKETQALVLAPTRELAQQ
IQKVILALGDYMGATCHACIGGTNLRSEIQKLQAEAPHIVVGTPGRVYDMLNRRHLSPKW
IKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQVVLLSATMPADVLEVTKKFMRDPIRIL
VKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHAR
DFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNREN
YIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgtctagcgattctgctgattacaacagctcaagagatagagaccatggggggccagat
ggaatggagcctgatggtgtcatcgagagcaattggaacgagattacggacaactttgat
gatatgaacctgaaagagactcttctcaggggaatatatgcgtatggttttgaaaaacca
tctgccattcaacagagggcaatcattccttgcatcaaaggctatgatgtcattgcccaa
gcccagtcaggcactggcaagacggccacgtttgccatctctatcttgcagcagctggac
atagagcagaaggagactcaggctctggtgttggctcccaccagagagctggctcagcag
atccagaaggtaattctggctcttggtgactacatgggagcaacctgccatgcctgcatc
ggaggaaccaatctccgtagcgaaatacagaagctccaggctgaggcccctcacatagtg
gtgggcacaccaggacgtgtgtatgacatgcttaacaggagacatctgtccccaaaatgg
attaagatgtttgttctggatgaggctgatgagatgttgagtcgagggttcaaagaccag
atctatgagatcttccagaaactgagcacaaacattcaagtggtcctgctctctgctacc
atgccagctgatgtgctagaggtgaccaagaagttcatgcgagaccccattcgcatcttg
gtgaagaaagaagagcttaccctcgagggtatcaagcaattctacataaatgtggagcga
gaggagtggaagctggacaccctgtgtgatctgtatgagactctcaccatcacccaggct
gtcatcttcctcaacacaaggagaaaagtcgactggttgactgagaagatgcatgctaga
gacttcacagtctctgctctgcacggcgacatggaccagaaggagcgtgacgtcattatg
agggagtttaggtctggctcaagcagagtgttgatcacaactgatcttttggctcgtgga
attgatgttcagcaggtttctctggtcattaactatgaccttcctacaaaccgagagaat
tacattcatagaattggtcgcggcggccgttttggcagaaaaggagttgctatcaacttc
gtcactgaggaagacaagaggattcttcgggacatcgagacgttttacaatacaactgtg
gaggagatgcctatgaatgtggccgacctgatttga
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