Lates calcarifer (barramundi perch): 108883771
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Entry
108883771 CDS
T04895
Symbol
cpdp
Name
(RefSeq) CPD photolyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108883771 (cpdp)
Enzymes [BR:
lcf01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
108883771 (cpdp)
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
108883771 (cpdp)
Prokaryotic type
108883771 (cpdp)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_photolyase
dsRBD2
CENP-U
Motif
Other DBs
NCBI-GeneID:
108883771
NCBI-ProteinID:
XP_018532761
UniProt:
A0A4W6FNW0
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Position
LG4:complement(17578352..17584424)
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AA seq
556 aa
AA seq
DB search
MLLCIWRGSSFSCAPRRLLRPVIHNHQRPRPIFFFLTKSFTSETIMSDKKRKAPSAAAGK
EPSAKQQKLAPSKEEKKERAAGWLQELVKQQRSEKKEMKFNKKRLRFISDTEKVKQGSEG
VLYWMLRDQRVQDNWALIHAQQLAVKENLPLHICFCLAVPKSELSTLRHYNFLLKGLEEV
AKECKALDIQFHLLHGSPGEVLPGFVSDRNLGAVVTDFSPLREPIKWLEDVKKSLSKDIP
LIQVDAHNIVPCWVASPKLEYSARTIRGKITNLLPEFLTDFPLVEKHPHTATRTAKAIDW
DKTLASLQLDRIVGVPEWAKPGTKGGMATLESFIDVRLKLFATQRNDPNAAALSQLSPWI
RFGHLSAQRVALQVQRSGKNAGQSVPSFIEELVVRRELTDNFCFYNKKYDSVEGAYEWAQ
KTLKDHAKDKREYLYKREQLEKAKTHDKLWNAAQYQMVTEGKMHGFLRMYWAKKILEWTS
SPEEALSIALYLNDRYELDGQDPNGFVGCMWSICGIHDQGWAERPVFGKIRFMNYKGCTR
KFDVAQFERKYCPKNL
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgctgctctgcatttggagaggctcatccttttcctgtgcaccaaggcgactcttgagg
cctgttatccacaatcatcagaggccccgtccaattttcttcttcttgaccaagtcattc
actagtgaaaccatcatgtcagacaaaaagcgtaaggcaccatctgctgctgctggtaag
gagcccagtgccaagcagcagaagctggctcccagcaaggaggagaagaaggagagagct
gctgggtggctgcaggagcttgtgaagcagcagaggtcagagaagaaggagatgaagttt
aacaaaaagcgcctccgctttatatctgacactgaaaaggtaaagcagggctcggagggt
gtcctgtattggatgttaagagaccaaagggtacaagataactgggcgctgatccacgct
cagcagcttgctgtgaaggaaaaccttcctctgcacatctgtttctgcttggctgtgcca
aaatcagaattgtccaccttgagacattacaactttctgctgaaaggtctggaagaagtt
gcaaaggaatgtaaagccttagacatccagttccatttgctccatggttcaccaggggaa
gttctccctggttttgtgtctgaccgcaacctgggggcagtggtgacagacttctccccc
ctcagagagccaataaagtggttggaggacgtcaaaaagagcctttcaaaggacattccc
ctcatacaggttgatgcccataatattgttccttgctgggtagcatcacctaaacttgag
tattccgccaggactatcagaggaaaaatcaccaatcttttaccagagttcctcactgat
tttcctctggtagagaaacatcctcacacagctacaagaacagccaaagcaatagactgg
gacaaaaccctggcctccctacagctcgacagaattgtaggagtaccggagtgggctaag
ccgggcaccaagggagggatggccacgttggagtccttcattgatgttcgcctcaaactg
tttgccacccaacgcaacgacccaaatgctgccgccctcagccagctctctccctggatc
cgcttcggccacctgtcagctcagcgtgtggcgctgcaagttcagcgcagtgggaagaac
gcgggtcagtctgtgccctccttcattgaggagctggttgtgcgcagggagcttactgac
aacttctgcttctacaacaagaaatacgacagtgtggaaggagcatatgagtgggctcag
aagaccttgaaagatcatgccaaagataaaagggagtatctctacaagcgagagcagctg
gagaaggcaaagacgcacgacaaactctggaacgcagctcagtaccagatggtcactgag
ggaaagatgcatggtttcctgaggatgtactgggccaaaaagattttggagtggacttcc
tcaccagaggaggctctctccattgccctataccttaatgatcgctacgaactggatgga
caggaccctaacggctttgttggttgtatgtggtctatttgtggcatccatgatcagggc
tgggctgagagacctgttttcggaaagatccgcttcatgaactacaaaggctgcactcgg
aagtttgacgtagcccagttcgagcggaagtactgtcccaaaaacctctga
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