Lates calcarifer (barramundi perch): 108883996
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Entry
108883996 CDS
T04895
Symbol
zc3h12ab
Name
(RefSeq) ribonuclease ZC3H12A
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108883996 (zc3h12ab)
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
108883996 (zc3h12ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
zf-CCCH
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
108883996
NCBI-ProteinID:
XP_018533103
UniProt:
A0A4W6CCM9
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Position
LG3:17521788..17533680
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AA seq
664 aa
AA seq
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MGCTEEEEMNADVAVFPSIHPWSKIPTTTCLNLTDSDTPAWIVPPSLPVQNSSSPSCEKM
YPGEPDQSLDPEHPESQMDFFHKLGYSTAQVLAVQQKFGPTMDTDKVLGELVRTGASREP
KQAPVTTMSVLVPRGDIQATGPTLQLPVPASSPQSREESCEDEDALRPIVIDGSNVAMSH
GNKEVFSCLGIQLAVNFFLDRGHTEVNVFVPSWRKEQPRPDVPITDQHILRDLERRKILV
FTPSRHVAGKRVVCNDDCFIVKLAYESDGIIVSNDMYRDLQRDVPEWKRFIEERLLMYSF
VNNKFMPPDDPLGRHGPTLENFLRRFPKTRKKQQCPYGKKCTYGLKCKFHHPERAKQSNR
SVADELRENAKYPPTAQKQPSACSSPVPGQSLLLVEDMAKKLTLGHEGGSPKKDHKNEHV
AQVKTSHRSSKRATSRKEKTSQHLTSDHGSGRHGGSQEKLDSGLGSIDSQPMEAPWSLCD
HQYGAPYRGCSQQTHSVQQYCSPRSAPSSCCSHGPPSWGTAPAFQPHSIRPVSNHRSDMI
PYGPPHYPGYGPYPVSMPTVYSQPADFQHARVYNHHQQAYWSDPFGGHPPAVRSLPGERS
QWEPLQGTQPSPSMEERGVIRKKLLAIFSAHLVDTAMEMFPHMMDPQMLVAEILMLQSQN
RSLR
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgggttgcacggaggaagaagagatgaatgctgacgttgctgtttttccatccatacac
ccgtggagtaaaatccccaccacaacctgtttaaacctcacagactctgacactcctgca
tggatcgtccctccatctctccctgtccaaaactcttccagtccttcctgtgagaaaatg
taccccggtgaacccgaccagtccctggaccccgagcacccagagtcccagatggacttc
ttccacaagctggggtactccacagctcaggttctcgccgtccagcagaagttcggcccc
accatggacacggataaggtcctgggagagctggtgaggactggcgcaagtcgggagccc
aagcaggcgccggtgaccacgatgtcggtgctggtgcccagaggggacatccaggccaca
ggccccaccctgcagctgcctgtccctgcatcgtctccacagagcagagaggagagctgt
gaggatgaagacgccctgagacccatcgttatagatggcagcaacgtggccatgagccac
gggaacaaggaagttttctcatgtctgggaattcagttggcagtgaacttcttcctggac
agaggccacactgaggtcaatgtgttcgttccctcgtggaggaaggagcagcctcggcca
gatgttcccattacagatcagcacattctgcgagacctggagaggaggaagatcctggtg
ttcacaccatcgaggcatgtcgcaggcaaacgggtggtctgtaacgacgactgcttcatt
gtcaagctggcctacgagtccgacggcatcatcgtgtccaacgacatgtaccgggacctt
caacgagatgtaccagagtggaagcgcttcattgaggagaggctgctcatgtactccttt
gttaataacaagtttatgcctcctgatgatcctctgggccgccatggaccgaccctggag
aacttcctgcggaggtttccaaagactcgaaaaaaacagcagtgcccttatggaaagaaa
tgtacttacggactcaaatgtaaattccaccaccctgagcgagccaaacagtccaatcgc
tcggttgccgatgagcttcgtgagaacgccaagtaccctccaactgctcagaaacaacct
tcagcttgctccagtcctgtgcctggacagagcctcttgctggtggaggatatggccaag
aaactgaccctggggcatgagggtggctctccaaagaaagaccataaaaacgaacatgta
gctcaggtgaagacgagtcaccgttccagcaagagagccacatctcgaaaggagaagacc
agccaacacttgacttctgaccacggctcagggcggcacggtggctctcaggagaagctg
gactctggtttaggctccatagatagtcagccaatggaggctccttggagtctgtgtgat
caccagtatggggcaccctacaggggctgcagtcagcagacccacagtgtacaacagtac
tgctctccaagaagtgcaccaagcagctgttgctcacatggccctccctcttgggggacc
gcaccagccttccagccccacagcatcaggccagtcagcaaccaccggtctgatatgatc
ccctatgggccgcctcattaccccggctacggtccatacccggtcagcatgcctacagtg
tacagccagccggcagacttccagcacgccagagtctacaaccaccaccagcaggcatat
tggtccgatccatttggcggtcaccctccagcggtccgcagcctaccgggggagcgctca
cagtgggagcctcttcagggtacgcaaccgagtcccagcatggaggagagaggggtcatc
cggaagaaactcctcgctatcttcagtgcccacttggtggacacggccatggaaatgttt
cctcacatgatggatccacagatgcttgttgccgaaatcctcatgctgcagagtcagaac
cggtcactgagatga
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