Lates calcarifer (barramundi perch): 108884033
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Entry
108884033 CDS
T04895
Name
(RefSeq) uncharacterized protein LOC108884033
KO
K19553
homeobox protein TGIF2
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
108884033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108884033
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
108884033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
Motif
Other DBs
NCBI-GeneID:
108884033
NCBI-ProteinID:
XP_018533164
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Position
LG12:complement(18262102..18270227)
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AA seq
632 aa
AA seq
DB search
MKAFKRALEEEHRPEQEHSSAVSDSDDGSPLDLSGRGLFGKRRRRGNLPKEAVQILRSWL
YEHRFNAYPSEQEKLSLSGQTNLSVLQICNWFINARRRLLPDLLRKDGKDPTKFTISRKV
GGKSEGHSSNGGGASSPERNSSPGSSQQRPSVIRSAPTLDLSLLGNTATAILTGAGYPGK
EGSVQALMKLDTQTLLREAEEQGANTACLTSTAMAPSPTSGLFNTPPPTPPELFPTQDFS
DLRLLVDAALQRAAEQENLKRLQESQNKPTEAVKTEQEEAQCGAYSSDMGPTPPPEDGQQ
VMDASRVQSLMEKAMTVPVSALTSVSAPVPQSSAASVLVPAPVLITAPRLSPLPTNNVIW
SPLEKDTAGASSPNQPQLIPAHLPTLVPLSAAVFGQANSQKPAAAPVVAPASSSAPASSS
ASAPLPATCPISAAAPATRPVSVPSPALLPATSPTSVTASSQASPPTVALVPATPSSAIA
SLTSPRGVPLYLPFHKSPLIPVTVPCPSPVSTPASSPAPVPSPVSASGQASIPVPASAPT
SSSTPTITSLAGLASHLIPPPPLQPSSPSNTSSISSISSSGGTQRNSAVVPSVWSMVHTD
TRQPSSLQVVKAPITTVWGPQHSLHTVSETVN
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattcaaacgagctctggaagaggagcaccgcccggagcaggagcactcttcg
gctgtgtcggacagcgatgacggctctccgcttgacctgtcaggaagagggctctttggg
aagcgccgtcgccgcggcaacctgcccaaggaggcggtgcagattctgcggagctggctg
tacgagcaccgcttcaacgcctacccgtcagagcaggagaaactcagtctgtcaggccag
acaaacctctctgtgctgcagatatgtaactggttcatcaatgcacgtcggcgcctcctc
cctgacctccttcgtaaagatggaaaagaccccaccaagttcaccatctcccgcaaggtt
ggtggtaaaagtgaaggccactcgtctaacggagggggagccagttctccagagagaaac
tcttcccccggctcgtctcagcagcgcccatctgtgatccgctctgcccccacgttggac
ctcagtcttcttgggaacacagcgacagctattctgacaggggcaggctacccgggcaag
gagggatcagtccaggcgctgatgaagctggatacacaaactttgctgagggaagcagag
gaacaaggggctaatacagcttgcctcaccagcacagcaatggcacctagtcccaccagc
ggcctcttcaacacgcctcccccgactcctcctgaactcttccccacccaggacttcagc
gatttgaggctccttgtcgatgcagcactgcagagggcagcagagcaggagaacctgaag
agactgcaggagagccagaacaaaccaacagaggctgtaaagactgaacaagaggaggca
cagtgcggtgcttacagcagtgacatgggcccgacaccgcctccagaagacggtcaacaa
gtcatggatgcctccagggtgcagagtctgatggagaaggctatgacagttccagtgtca
gctttaacttcagtgtcagctccagtgcctcagtcctctgcagcctctgtactagtacca
gctcctgtcttgatcacggccccgaggctatctcctctcccgacaaataacgtcatctgg
agccccctggagaaggacacagccggagcctccagcccaaaccagccgcagctcatccca
gcccatctgccaaccttagtgccactgtcagctgcagttttcggacaggcaaattctcag
aaaccagctgctgctccagtcgtcgccccagcttcatcatcagctccagcctcaagctca
gcttcagctccactgcccgccacatgtcccataagtgcagcagcaccagctacaaggcca
gtctctgtgccatcaccagccctcctcccagctacaagtcccacctctgtcactgcttca
agccaggcttcacccccaactgtagcgcttgttccagccactccctcttcagccattgcc
tccctcacatcccccaggggagtcccgctctacctgccattccacaaatcccctttaatc
cctgtcacagttccgtgtccatcacctgtttcgaccccagcatcgtctccagcccccgtt
ccctccccagtctccgcctctggccaagcttcaatccctgtcccagcttcagccccaaca
tcctcctctactccaaccatcacgtctcttgcaggcctcgcctcccacctcattcctcct
cctcctcttcagccctcctccccaagcaacaccagcagcattagtagtattagtagtagt
ggtggtacccagaggaattcagcagtggtgcccagtgtttggagcatggtccatactgac
accaggcaacccagctctcttcaagtggtaaaggcacccatcaccacagtgtggggccca
cagcatagcctgcacacggtgagtgaaactgttaactag
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