Lates calcarifer (barramundi perch): 108884217
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Entry
108884217 CDS
T04895
Symbol
abca4b
Name
(RefSeq) retinal-specific phospholipid-transporting ATPase ABCA4
KO
K05644
ATP-binding cassette, subfamily A (ABC1), member 4
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
108884217 (abca4b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcf02000
]
108884217 (abca4b)
Transporters [BR:
lcf02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
108884217 (abca4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
Motif
Other DBs
NCBI-GeneID:
108884217
NCBI-ProteinID:
XP_018533493
UniProt:
A0AAJ7PNA0
LinkDB
All DBs
Position
LG4:6610970..6647928
Genome browser
AA seq
2260 aa
AA seq
DB search
MPSAGILPWIQGIFCNANNPCFRYPTRGESPGVVSNYNNSVLARFYVDVQELLLNDTEVQ
QFGQLWHEMSSFSNFMDALRNNPSRVSGRGLKIDDILKDDEVLTAFLLRDAGLSESIVYQ
LVNAQIKLEQFAFGIPDLQLKDIACSQALLERFIIFPSRMGLHGVRNAMCALSQQRLQKI
EDILYANLDFFKIFRLMPQVMDSSSQGVDLHFWGRVLNAASEKIQILMERESSQELLKAV
SSLFQAGGPSSFTQLMSSVSSLFCGYPEGGGSRVLSFNWYEDNNYKVFLGVNGTKSHNYV
YDDTTTPFCNALMQTLESNPVTKIVWNSVKPLLMGKILYTPDSPAVRKILRSANTTFEEL
ERLQNMAKAWEEVGPQLWAFLQNSVQMNMIRDTLRNPTVMDFMDKSLEDTDFTTKDILNF
LYNGPEEQREAGMPNFDWRNIFNISDQIIRMFNQYGECIDLDKFVAHTDESQMIHQALYL
LEENKFWAGVVFMDMYPWTTSVPPHVKYKIRMDIDAVERTNKIKDRYWDPGPRADPVEDQ
RYIWGGFAYLQDMIEHGIIKLHTGNDWPLGVYIQQMPYPCYVDDLFMITLNRCFPMFMVL
AWIYSVSMTVKSIVLEKELRLKETLKAMGVDNGAIWYTWFIDSFIMMTASTALLTSIVMG
GKVLNYSDPILVFFFLLTFTIATIMQCFLMSVFFNKANLAAACSGIIYFTLYLPHILCFA
WQDRITKNMKLAASLLSPVAFGFGTEYLSRYEEQGLGLQWDNIQTSPLEKDTYSFLTSIL
MMMFDAVLYAVLAWYLDNVFPGQYGIGRPFYFLFQPSYWQRLPPSHTEMADPDPEKPEPE
NMEKDVERRGTPETYTCNGSASRKTCKHQSKREQLEREKELLRRQQETPNQEEDCQDSGK
EGQLFFEPDPVGLTMGVQIQDLVKVFDGSSRPAVNCLNINFYEGQITSFLGHNGAGKTTT
MSILTGLFPPTSGTAYINGRDIRTDMEIVRSSMGMCPQYNILFKHLTVEEHILFYSLLKG
RTQAEAKREVEDMLVDLGLPHKRDDEAQNLSGGMQRKLSVAMAFVGGSKVVILDEPTSGV
DPYSRRSIWDLLLKYRNGRTVILSTHHMDEADLLSDRIAIISKGQLHCCGSPLFLKNCFG
VGFYLTLVRRIKDLRKGENDCDCASDCSCSCSICTRYKDQSQHQSQHLDRVLDGDVDSIT
SLIHHHVPEAKLIEMIGQELTYLLPNKGFKHRAYASLFRELEETLADMGLSSFGISDTSL
EEIFIKVTADGEAANNATTPEQWVLQRRKNNSTGGVEGDEEHNGVNGTAHGESDSSAGKG
SRQVKGATLILKQFHALLVKRFHHATRSQKDFLAQIIFPASFVLIALIFTMIVPPFGEYP
SLTLTPWMYGQQFTFFSNEQPFDPKMKRFTERLLNSPGLGTRCMKGEPLGMPCSNSTSEW
ENPDVSPVVRNILQSPEWNQRNPSPSCQCSTSKKLTMMPICPIGAGGLPPRQRIEATGDT
MLDLTDRNISDYLVKTYPSLIRTSLKSKYWVNEQRYGGLSVGGQLPILDVDPKDIQNTFH
QLGQMLNITGGNSSKLALRDIGPFLRYMESEFNIKVWYNNKGWHAMVAFMNVANNAILRA
LLPPTAKPVEFGITAINHPLNLTKEQLSEVTVLTTSVDAVVAICVIFAMSFIPASFVLYL
IQERVTKAKHLQFVSGVSPLIYWVSNFFWDMINYSVSTAMVVGIFMAFDKKCYTSPSNLP
ALIALLLLYGWSVTPMMYPMSYIFSIPSTAYVSLSCINLFIGINSSAITFILELFENNRP
LLTFNEWLKKGLLVFPHFCLGRGLIDMAMNQAVTDVYARFGEEYIADPFRWDFVGKNIAF
MAVEGFVYFILNLFIQYRFFLDHWLSDNKQTAILDEDNDVAEERERIYDGRSKTDILQIR
DLSKTYVGRKRAAVDRICVGVPAGECFGLLGVNGAGKTTTFKMLTGDTDVSSGDATVAGY
SILTEILDVHQNMGYCPQFDAIDELLTGREHLYLYARLRGVPESEIPRVAEWGIQKLGLT
EYAGCCAGTYSGGNKRKLSTAIAMIGCPALVLLDEPTTGMDPHSRRFLWNAIISVIRDGR
AVVLTSHSMEECEALCTRLAIMVNGTFKCLGTIQHLKYKFGDGYVVTMKIKAAKAGSPPE
LEPVESFMESSFPGCVQREKHYNTLQYEIASSSLARIFQVVVANKERLSIEDYSVSQTTL
DQVFVNFAKQQMGEDEDVTLNRRMAGRRKDIKISPVKRKT
NT seq
6783 nt
NT seq
+upstream
nt +downstream
nt
atgccctcggcagggatcctgccctggattcagggcattttctgcaacgccaacaacccc
tgcttcagatatccaaccagaggagagtctccaggagtcgtctccaactataacaactct
gtactggcacggttctatgttgatgtccaggagcttctgctgaatgacacagaagtccag
cagtttggccagctctggcatgaaatgtcatccttctcaaacttcatggacgcattacgc
aacaacccatctcgggtgtcaggccgggggctcaagatagatgacattctgaaggatgat
gaggttctcacagccttcctgttgcgagatgctggcctctcagagtcaatagtctaccag
cttgtcaatgcacaaattaaactggaacagtttgcatttggtatcccagacctgcagctg
aaagacattgcatgcagtcaggccttgctggagcgcttcataatcttccccagtcgcatg
ggcctccatggggtccgcaacgccatgtgtgctctcagccagcagaggctgcagaagata
gaggacatcctctatgctaatctggactttttcaagatcttcagactgatgcctcaggtt
atggacagcagctcccagggggttgacctgcacttctggggtcgggttcttaacgcggca
tcagagaagatccaaatcctgatggaacgggagagctctcaggagctcctgaaggcagtc
tcctctctgttccaagctgggggtccctcctccttcacccagctgatgtccagtgtgtcg
agcctcttctgtggatacccagagggaggtggctccagggtcctgtccttcaattggtac
gaggacaacaactacaaggtgtttctgggggtcaatggcaccaagagccacaactatgtc
tatgatgacaccaccactcctttctgcaacgccctcatgcagaccctggagtccaaccct
gtcacaaaaatcgtgtggaattcagtcaaacccctgctgatgggaaagatcctgtacact
cccgactcccctgccgtccgcaagatattaaggagtgccaacacaacctttgaggagcta
gagaggctccagaacatggctaaggcctgggaggaggtgggacctcagctttgggctttt
ttacaaaacagcgtccagatgaacatgatcagggacacactgagaaacccaacagtgatg
gacttcatggataaaagtcttgaggacactgactttaccaccaaagacattcttaacttc
ctgtacaatggtcctgaggaacaaagggaggcgggaatgccaaactttgactggagaaac
atttttaatatcagcgaccagatcatacgtatgttcaaccagtacggagagtgcatcgac
ttggacaagtttgtggcccacacagatgagtcccagatgattcaccaggctttgtacctg
ctagaggagaacaagttttgggctggtgtggtcttcatggacatgtatccctggactacg
agtgtaccgccacatgtcaagtataagatccgcatggacattgatgcagtggagcgtact
aacaagatcaaagacaggtactgggaccctggcccccgggcagaccctgttgaggaccag
aggtacatctggggaggctttgcctacctgcaggacatgattgaacatggcatcatcaag
cttcacacaggcaacgactggccactcggggtctacattcagcagatgccctacccgtgt
tatgtagatgacctctttatgatcacactgaaccgctgcttcccgatgttcatggtgctg
gcctggatctactctgtatccatgactgtgaagagcattgtgctggagaaagagctgcgc
cttaaagagaccctcaaagccatgggggtggacaatggcgccatttggtacacgtggttc
atcgacagcttcatcatgatgactgcaagcactgcactgctcacctccatcgtcatgggt
gggaaggtgctgaattacagtgaccccatccttgtcttcttcttcctgctgactttcacc
attgccaccatcatgcagtgtttcctgatgagtgttttcttcaacaaggccaaccttgca
gctgcctgcagtggcatcatctacttcaccctctacctgcctcacatcctctgctttgcc
tggcaggaccgcatcacaaaaaacatgaagttggctgctagcttgttgtctccagtggct
tttggcttcgggacagagtacctgtcacggtatgaggagcagggtttgggcctgcagtgg
gacaacatccagaccagtccattagagaaagacacctactccttcctcacctccatcctc
atgatgatgtttgatgctgtcctctatgctgtcctggcctggtatctggataatgtcttt
ccaggacagtatggcatcggccggcccttctacttcctcttccagccctcatactggcaa
agacttccaccctctcacacagaaatggctgatccagatcctgagaaacctgaaccagaa
aacatggagaaggatgttgagaggaggggcacaccagagacatacacctgcaacggctca
gccagcaggaaaacctgcaagcaccaaagtaagagggaacaacttgagagagagaaggag
ctgctgagaagacaacaggaaactccaaatcaggaggaagactgtcaggactctgggaaa
gaaggtcagttgttctttgaacctgacccagtgggactgacaatgggagtccagatccag
gacctggtaaaggtgtttgatggaagctctcgtccagcagtcaactgtctcaacatcaat
ttctatgaaggccagatcacatccttcctgggacacaacggggctggaaaaaccacaact
atgtccatccttactggcctgttcccacctacatctggcacagcctacatcaatggaaga
gatattaggactgatatggaaatcgttcgttcctctatgggcatgtgtcctcaatacaac
atcctctttaaacatctcacagtggaagagcacatcctgttctactcgctgctgaagggt
cggactcaggcggaggcaaagagggaggtagaggacatgctagtggacctggggctgcct
cacaagagagatgatgaggctcagaacctctcaggtggtatgcagaggaaactgtctgtt
gccatggcgtttgttggagggtcaaaggttgtcatcctggatgaacccacctcaggagtg
gacccctattccaggagatctatatgggacctcctactgaaatacagaaatggccgtaca
gtgattctgtccacccatcacatggacgaggctgacctgctgagcgaccgcatcgccatc
atctcaaaaggacagctgcactgttgcgggtccccccttttcctcaagaattgttttgga
gtaggtttctatctgacactagtccgccgcataaaggacctgaggaagggtgagaatgac
tgcgactgtgcctcagactgctcctgttcctgctccatatgtaccagatacaaagatcag
tctcagcaccagtcccagcacttagatagagttctagatggggatgtagacagcatcaca
agcctcatccatcaccatgtcccagaagccaaactgattgagatgattggacaggagctg
acctatctgcttcccaataaagggttcaagcatcgggcgtatgccagtctgttcagagag
ctggaggagactcttgctgatatgggtctcagcagttttggcatctctgatacatcacta
gaagagatattcataaaggtcactgcagatggagaagcagcgaataatgccaccactcct
gagcagtgggtgttacagcggagaaaaaacaacagcactggtggtgtcgagggagatgaa
gaacataatggcgtgaatggcactgcccacggtgaatcagacagcagtgcaggaaagggc
tccaggcaggtcaaaggtgccactctgatcctgaagcagttccatgcgctgctggttaag
aggtttcaccacgccacaagaagccagaaagacttcctggcacagatcatcttccctgcc
agttttgtcctgatagcgttgattttcaccatgattgtccctccatttggagagtatccc
agtctgactctgacgccctggatgtatggacaacagttcaccttcttcagtaatgagcaa
ccatttgaccccaaaatgaaacgcttcacagagcgtttgttaaattcaccaggcctgggg
acacgctgcatgaaaggagaaccactaggaatgccgtgtagtaacagtacatcagagtgg
gagaatcccgatgtctcgcctgtggtcagaaacatcttacagagtcccgagtggaaccag
agaaacccgtctccctcctgccagtgcagcaccagtaagaagctgaccatgatgcccatc
tgtccgattggcgcaggcggcctcccccctcgccagcgaatcgaggccacgggagacacg
atgctggatctgacagataggaacatctctgactacctggtgaaaacctaccccagtctc
atcagaaccagtttgaagagcaaatactgggtgaatgaacaaagatatggaggtctgtca
gtaggaggacaacttcctatcctggatgtggaccccaaagacatccagaacactttccat
cagctggggcaaatgctcaacatcacagggggtaacagttctaaacttgcactgagggat
attggtccattcttgcgatatatggaaagtgaattcaatataaaggtatggtataataat
aaaggctggcacgccatggtggccttcatgaatgtggccaataatgccatcctgcgggcc
ctcctacccccgactgccaaacctgtcgagtttggcatcactgccatcaaccaccctctg
aacctcaccaaagagcagctctccgaagtcactgtgttgaccacctctgtggatgccgta
gtggcgatctgtgttattttcgccatgtccttcattcctgccagcttcgtcctctacctc
atccaggagcgtgtcaccaaggccaaacacctgcagtttgtcagtggggtcagcccttta
atctactgggtgtccaacttcttctgggacatgattaactactctgtcagcactgcaatg
gtggtcggcattttcatggcttttgacaaaaaatgttacacatcaccgtccaacctgcca
gccctaatagcactgcttctactatatggatggtcagtgacacccatgatgtatcctatg
tcctacatattcagcatccccagtactgcatatgtgtctctgtcctgcatcaacctgttc
ataggcataaacagcagcgccatcaccttcatcctggagctttttgaaaataatcggcct
ttgctgacgtttaatgagtggctgaagaaaggcctgctggtgtttcctcacttctgcctg
gggcgaggactgatagacatggccatgaaccaggctgttactgatgtttacgccaggttt
ggtgaggagtacatagcagaccctttccggtgggattttgtgggaaaaaacattgctttc
atggcagtggaaggctttgtctacttcattctcaatcttttcatccagtaccggttcttc
ttggaccactggttatcagacaacaagcagactgcaatactagatgaagacaatgatgtg
gcagaggagagggagagaatttatgatggaaggagcaagacagacatcctgcagatcaga
gacctctctaagacgtatgtgggcaggaagagggcagctgtggaccggatttgtgtggga
gttcctgcaggagagtgctttggtctcttgggagttaatggagctggaaagacgacgacc
ttcaaaatgctgactggtgacactgatgtcagctctggggacgctactgtggctggttac
agcatcctgacagagattctggacgtgcaccagaacatgggctactgccctcagtttgac
gccatcgatgagctccttaccggcagggagcatctctacctctacgctcgtctcagaggg
gttcccgagtcagagatccccagggtggcagagtggggcatccagaagctgggcctgaca
gagtatgccggctgctgtgcagggacctacagtggaggcaacaaacggaaactctccaca
gctatagcaatgattggctgcccagcgctggtgctgctggacgagcccacgacagggatg
gatccgcactctcgccgcttcctgtggaatgccatcataagcgtcattcgggacggcagg
gccgtggtgctaacatcacacagcatggaggagtgtgaggccctctgcactcgactggcc
atcatggtcaatgggaccttcaagtgtttgggtaccatccagcatctgaaatacaagttt
ggtgacggctacgtagtgaccatgaaaatcaaggcagctaaagctggctcacccccagag
ctggagcctgttgagagctttatggagagcagcttccccggctgtgttcagcgggagaag
cactacaacacactgcagtatgagattgcctcctcctccctagccagaatatttcaggtg
gtggtggccaataaagagaggctcagcattgaggactactctgtttctcaaacaacactg
gaccaggtctttgtcaactttgccaagcaacagatgggagaagatgaggacgttacctta
aacagacgaatggcaggcagaagaaaagacatcaagatctcaccagtgaagaggaaaaca
tga
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integrated database retrieval system
