Lates calcarifer (barramundi perch): 108884242
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Entry
108884242 CDS
T04895
Name
(RefSeq) piezo-type mechanosensitive ion channel component 2 isoform X1
KO
K22128
piezo-type mechanosensitive ion channel component 1/2
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108884242
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108884242
Membrane trafficking [BR:
lcf04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
108884242
Ion channels [BR:
lcf04040
]
Other channels
Mechanosensitive channel (Piezo)
108884242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piezo_TM1-24
Piezo_TM25-28
Piezo_cap
Piezo_THU9_anchor
THU_Piezo1
CAMSAP_CC1
Motif
Other DBs
NCBI-GeneID:
108884242
NCBI-ProteinID:
XP_018533550
UniProt:
A0AAJ7LVY8
LinkDB
All DBs
Position
LG4:5943782..6016917
Genome browser
AA seq
3012 aa
AA seq
DB search
MASEVVCGLVFRLLLPVCLAAACLFRYNALSFVYLIYLLLIPLFAEPTSTSMQGHTGRLL
QSLCFTSMSFLLLHIIYQITVNSLLAGNSITSDFNCSTWEKSIRQIGFESVIGADAGNGI
RVFIPDIGMFVAGLAIWLLCRSLVQKRPPEDMAQYNADFEAEEQEEEEKLSLEDNILLDE
DFEAGYEAEEDEEDEELDEEEEEEEEEEEEEAKESIRMKVLRHVAEVASKVKEVIGNLIT
TAGKVVVTILLGMTGIMLPSLSSAVYFFIFLFLCTWWSLCRTFDTLIFSCMCVLMAIFSA
GHIIVLYLYQFQFFQESIPPDDTYISVFGISPIVQSNCSYTWKLIVHPQRKWYHFVSPIM
LLILYYTLATLIRLWLQEPIDQLTDDKDDELCEEEDLDGDRTSNSANRKRLRWWESRQPT
DEKNLLSIQDGFSTAEAVPTSNGTSFEFPAGNGPVCLDLYSTPQYKIDQPSDGTEKKDES
VYEVCLPPEDSALDGGEEKSEGGEDGMKKRGVSAMVKVFHFVMKQSYICALIAMMVWSIT
YVSWLTFVFLMWSCALWMVRDRRRYAMLSSPFMVAYGNLLIVLQYIFSFEVMNKYHDGHF
FSGFFVKKNNPFHSLSSKVLCLLSFWLLLRQTLTERWEKQKEDSAGLSDVHVEDQEKKEE
EDSEEGGEQDIMQVLGNMVMAVLVKYWIYICGGMFFVVTFEGTTKTVVTDGITKTIGTTV
IYKVFYMMMFLSCVALYQVHYEWWRRILKYFWMSVVMYTMLVLTLVYTFQFQNSPRHWSN
MTGLDIEGLADMGLKQFELAELFTRICIPTSFLLVCILHLHYFHNRFLQLTDLQAVVAKE
ESTIYRLVHPDGSLADLTMLSGSSVDAALHKEEEEEDLQEERGEWGTEEEKKQALVVVMD
DTDMAGEKPGSLSDARQSSTEESHHCSAGTEPEPSTEQSSDLKNKWHLVVDRLTVLFLKF
LEYFHKLQLFIWWLLEIHIIKIVSCYIILVCVQEVSLFNYVFVASWAFALPYSQYRPLAS
NVCTVWTCVIIVCKMLYQLETIKPGEYSKICPMPDNLTKEQRDELTESLLYKKNDPANWV
GLDKSEDLLGYLRNNFLMLALLVFEVTIYRHQEYFRLRNKLSPPAARVIFHDITRQHLDI
GIVSFIKYFINYFFYKFGLETCLLLVVNVIGQRMDFYAMLHAFALIAVMYRRRRKAIAEI
WPKYCCFLACMLTFQYFICIGIPPAACKDYPWRFPSSSTDSNVIKWLYVPDFHTKPNPKF
LIYDFMLLLCASLQRQVFDDENKAVVRLMAGDNVEICRDLDAASFSVHNPVPDFIHCRSY
LDMLKVIMFSYLFWFVLTIIFITGTTRISVFCMGYLVACFYFLLFGGELLLKPIKKILHY
WDFLIAYNIFVITMKNILSILACGYINTLIKKQCWLIQLLSLACTIKDYKINTRQDDMPA
EERCELPSNEAGIIWDSICFAFLLLQRRVFMSYYFLHVVADIRASQILASRGAELFQATI
VKAVRARLEEERKSVEQLKRQMERIKVRQQKFKRGKEKMLSLAQESGEGQTIVQPEDDDD
GAQRTKAKTKKKQWWRPWVDHASMVRSGDYYLFETDSEEEEEEEEKKDEEPPKKSAFQRA
IRKFVSAVLALPRSIIKLPKTILQYVVKAGKFLYHAWITDPKAALRARGKEKRKFWKKYT
KGVRHRKSKKDAGHVAIEVGEMSDGQEKGEENKQSGSPDNIIKRVFNIIKFTWVLFQTTV
ESFTKWMNDMCREYIDISTVLRIERCMLTREVKKGNVPSRESIHVYYQKAMRLNMSRQAS
MDQLSDDDSACGSTRVRRRPGGYHMESQDSTASRDSMSSAVTEATMVFSRQSTLEDLDGM
PERIPKTSERDRPKLRKIYAMDMSNSSMDSASSFISSEATQCVTLYSRQGTTDTIEEVED
EQDQGDDRQQDPWETKQVEDSQGAEGDPWSDGEPRVEEEVGEGQEGQEGQGGQEGQEGME
GEEVEEVEEESEVPEDQEREEAPWESFCVGEGPSLRQEEAECASSVQDKDFITEGEDGVG
QQDFMQTEGRAGLLYTPDTDASKTSDADVPPSYSKAVSFDRLEISDDESDTERKRRMVMT
SDSRSDSRSDIMLPSMTTELTASELLLNKMFYDEELEQSDKFYNCQPLILQLCYALYNML
VAHSEMVCYLVIIINHMVSASCATLVLPITIFLWAMLSVPRPSKRYWMTAIVYTEVTIVI
KYFFQFGFFPFNQKSLDKNKPYHPPNIIGVEKKDGYVHYDLVQLLALFFHRSILKCHGLW
DEDDPKEKKEPPHQSESEDEGKEESDKESEPASSLISERRGSGQTLRSINFGTSIDSGHV
QVHFPQQQTYQRRKSSSGGSHISHRSLHSSARSKRGSTASHNSSRRDGSEASVHQKTRKQ
MIMEKLREQLYKAKAFIIKRVLEIYLPMRQFFYNLIHPEYSAVTDVYVLMFLADTVDFII
IVFGFWAFGKHSAADITSSLSEDQVPGPFLVMVLIQFGTMVVDRALYLRKSVLGKVIFQV
ILVFGIHFWMFFILPGVTMKRFSDNPVAQMWYFVKCIYFGLSAYQIRCGYPTRVLGNFLT
KSYNYVNLFLFQGFRLVPFLTELRAVMDWVWTDTSLSLSSWICVEDIYAHIFILKCWRES
EKRYPQPRGQKKKKVVKYGMGGMIVMLLICIVWFPLLFMSLVKSVAGVVNAPLDVSLEIT
LAGFQPIFTMSAQQKQLQAVTREEFETFTKKYLGNDDALQWLEGYMPEDLVIARLKGNSN
SLWTISPPSRDNLKDMLTSDEEFPITVSWTVQRNLSLGAKAEMASGKHVARINNATKQEL
IKVLQGEGSGLQVTLADIVPRYIRAPSDADAKPVEQFSEDDMMMNITVTLKRKNEASSNQ
TQEWWVVNQTEPGILDKKSPKMDEAAGLDIYVFSDQVSPPSLGFLAGYGIMGLYASVVLV
IGKFVREFFSGISHTIMFEELPNVDRILKLCTDIFLVRETGELDLEEDMYAKLIFLYRSP
ETMIKWTREKTQ
NT seq
9039 nt
NT seq
+upstream
nt +downstream
nt
atggcctctgaggtggtgtgcgggctggtcttcaggttactgctgccagtgtgtcttgca
gctgcttgcctgttcaggtacaatgccctgtccttcgtctacctcatctatctcctgctt
attccactcttcgcggagcccacaagcacgtcgatgcagggccacacagggcgtctgctg
cagtccctctgcttcaccagtatgtccttcctgctgctccacatcatctatcagattacc
gtcaacagcctcctggccgggaactccatcacctccgacttcaactgttccacgtgggag
aaatccataagacaaattggcttcgagagtgtgatcggtgcagatgcggggaacggcatc
cgagtgttcatccctgacattggcatgttcgtggccggcttggccatctggctgctgtgt
cgcagtctggtccagaagaggccgcctgaggacatggcccagtacaacgcagacttcgaa
gcagaggaacaagaagaagaggagaagctgagcctggaagacaacatcctgctggatgag
gactttgaggcagggtacgaggccgaggaggacgaggaagatgaggagctggatgaggag
gaagaggaggaggaggaggaggaggaggaggaagcgaaggagagcataaggatgaaggtc
ctgcgtcacgtggcggaggtcgcatccaaagtgaaggaggtcatagggaacttgatcacc
actgcggggaaggtggtggtcaccatcttgctgggcatgacaggcatcatgctgccctcg
ctgtcctcggctgtttacttcttcatcttcctgttcctgtgcacctggtggtccctctgc
cggaccttcgacacactcatcttcagctgcatgtgcgtcctcatggccatcttcagcgcc
ggacacatcattgtcctctacctctaccagttccagttcttccaggagtccatcccacca
gatgacacctatatcagtgtattcggcatctcccccattgttcagagcaactgctcctac
acatggaaactcatcgtgcacccgcaacgcaagtggtaccactttgtgagtcccatcatg
ctgctgattctctactacactctggccacgctcatccgcctctggctgcaggaacccatc
gaccagctgacggacgacaaggacgacgagctgtgtgaggaggaggatctggacggagac
agaacaagtaactcggccaacaggaagaggcttcggtggtgggaatcacgccagcccaca
gatgagaaaaacctgctctccatccaggatggcttcagtacagctgaggctgtgcccacc
tcaaatgggacgtcctttgaattcccagccgggaatggaccagtttgtttggacttgtac
tccaccccccagtataaaatagaccagcccagtgatggtacagagaagaaggatgagagt
gtgtatgaagtgtgtttgcccccggaggattcggcgttagacggaggagaggagaagtct
gagggaggcgaggatgggatgaagaaaaggggcgtcagcgcgatggtcaaagtcttccac
ttcgtcatgaaacagagctacatctgtgctctcatagccatgatggtttggagcatcacg
tacgtcagctggctgacgtttgtcttcctaatgtggtcttgtgcgctgtggatggtgagg
gaccggaggcgttacgccatgctgtcctctcccttcatggtggcctacggcaacctgctg
atagtcctgcagtacattttcagttttgaggtcatgaacaaatatcatgatggacatttt
ttctcaggattctttgtcaagaagaataacccttttcactcactttcatcaaaggtcctg
tgtctgctgagcttctggctgctgctgagacaaacgctcacagagagatgggaaaaacaa
aaggaagacagtgctgggctctcagacgttcatgtggaggatcaagagaagaaggaggag
gaggactctgaggagggaggggagcaggacatcatgcaggtgctgggcaacatggtcatg
gctgtgctggtcaaatactggatctacatctgcggggggatgttctttgttgtcaccttt
gagggaaccaccaaaaccgtcgtaacagatggaatcaccaagaccatcggaaccaccgtc
atatacaaggtcttctacatgatgatgttcctctcctgcgtggcgctctaccaggtccac
tatgagtggtggcgaaggatcctgaagtacttctggatgtcggtggtgatgtacaccatg
ctggtcctcacactggtctacaccttccagtttcaaaactcaccaagacactggtccaac
atgacgggcctggacatagaaggcttggcggacatgggcctgaagcagtttgaactggct
gagctgttcaccaggatttgcattcctacttccttcctgctggtgtgtattctccacttg
cactacttccacaaccgcttcctccagctcaccgacctccaggctgtagtggccaaagag
gagagcacaatctacagactggttcatccggatggcagtctggcagacctcaccatgctc
agtggcagctcggtggacgcagcgctgcacaaggaggaggaggaggaggatctgcaggag
gagcggggggagtgggggacagaggaggagaagaagcaggccctagtggtggtgatggat
gacactgacatggctggcgagaagcccgggagcctctccgacgcgcggcagtccagcaca
gaggagagccaccactgcagtgcggggaccgagccagagccgagcaccgagcagagctca
gatctgaagaataagtggcacctggtagtcgaccgtctgactgtgctcttcctcaagttc
ctggagtatttccacaaactgcagctgttcatctggtggttgctggagatccacatcatc
aagatcgtgtcctgctacatcatcctggtctgtgttcaagaggtttctttgttcaactat
gtgttcgttgcatcctgggcctttgcgctgccctacagccagtatcggccccttgcctcc
aatgtttgcactgtgtggacgtgtgtcatcatcgtatgtaaaatgttgtaccagctggag
accataaagcccggggagtactccaagatatgccctatgccagacaacctcacaaaagag
cagcgggatgagttgactgagtctctgctatataagaaaaatgatccagccaactgggtg
ggattggataagtctgaggacctgctgggctacctcaggaacaacttcttgatgttggct
ctcttagtgttcgaggtgaccatctaccgccatcaggaatacttcagactgaggaacaag
ctgtcgcctcctgccgcccgggtcattttccacgacatcacacggcagcacctggacatc
ggcatcgtcagcttcatcaaatacttcatcaactacttcttctacaagtttggacttgag
acgtgcctgctgctggtggtcaatgtaatcgggcagcgaatggacttctatgccatgctt
catgcctttgccttgatagccgtcatgtatagacgaaggaggaaagccatcgctgagatc
tggcccaagtactgctgcttcctggcctgcatgctgaccttccagtactttatctgcatc
gggatcccacctgcagcctgtaaagactatccctggaggtttcccagctcttctacagac
tccaatgtgatcaagtggctctatgttccagatttccacaccaagcccaatccaaagttc
ctcatctacgacttcatgttactgctgtgtgcctctcttcagaggcaggtgtttgatgat
gagaacaaggcagtggttcgcctcatggccggagacaacgtggagatctgtagagacctg
gacgcagcctccttcagcgtccacaaccccgtccccgactttatccactgcaggtcctac
cttgacatgctgaaggtcatcatgttcagctacctgttctggttcgtcctcaccatcatc
ttcatcacgggaaccacacgcatcagcgtcttctgcatgggatacctggtcgcctgcttc
tacttcctgctcttcggtggagagctgctactgaagccgatcaaaaaaatcctgcactac
tgggacttcctgatcgcctacaacatctttgtgatcaccatgaagaacattttgtctatc
ctggcttgtggctacatcaacactctgatcaaaaagcagtgctggttgatccagttgtta
agtttggcctgcaccattaaagactataaaatcaacaccagacaggacgatatgcccgct
gaagagcgctgtgaactgcccagtaacgaggctgggatcatctgggacagtatctgcttc
gccttcctgctgctgcagagacgagtcttcatgagttactacttcctgcacgtggtggct
gatatcagggcgtcacagatcctcgcatccagaggtgctgagcttttccaggccactata
gtgaaggcggtgagggccaggctggaggaggagcgcaaatctgtggagcagctgaaaaga
cagatggagcgcattaaagtgaggcagcaaaagtttaaaaggggcaaggagaagatgctg
agcttggcgcaggagtctggagaaggacagacaatcgtgcagcccgaggacgatgacgat
ggagcacagcgaacgaaagccaagaccaaaaaaaagcagtggtggaggccgtgggttgac
catgcttccatggttagaagtggagactattacttgtttgaaacagacagtgaggaggaa
gaggaggaggaggagaaaaaagatgaggagcctccaaagaagtcagcatttcagcgagct
attcggaagtttgtctctgctgttctggctttgcccaggtctatcattaagctgcctaaa
actattctgcagtacgtagtcaaggcaggaaagtttctttaccacgcctggatcacagac
cctaaagctgcactgagagcacgaggcaaagagaaacgcaaattttggaagaaatacacc
aagggagttagacacaggaagagcaagaaagatgcaggtcatgtggccatagaggttggt
gagatgtctgatgggcaagaaaaaggagaggagaacaagcagtctggtagtccagacaac
atcatcaaacgagtgttcaacatcataaagttcacctgggtgctcttccagacgacggtg
gagagcttcaccaaatggatgaatgacatgtgcagagagtacatcgacatctccactgtg
ctgcgtatcgagcgctgcatgctgacgcgagaggtcaaaaagggtaatgttccttccaga
gagagcatccacgtctactaccagaaggccatgaggctcaacatgtctaggcaggccagc
atggatcagctcagcgacgacgactcggcctgcggctccaccagagtccgaaggagacca
ggaggctaccacatggagagccaggactcgaccgcctccagagacagcatgtccagtgcc
gtcactgaggccaccatggtgttttctcgccagtccacgctggaagatctcgatggaatg
ccagagcgcattcccaaaactagcgagcgtgacaggcccaaactgcgtaagatctacgcc
atggacatgtccaattcatcaatggacagcgccagcagtttcatctccagtgaagcgacc
cagtgcgtcacgctctactccagacagggcaccacagacaccatagaagaagtggaggac
gagcaggatcaaggggacgacaggcagcaggatccctgggaaaccaaacaggttgaagac
agtcagggggctgagggtgatccctggagtgacggagagcctagggtggaagaggaggtt
ggtgaaggtcaggaggggcaggaggggcagggggggcaggaggggcaggagggaatggag
ggtgaggaggttgaggaggttgaggaggaatcagaggttccagaggaccaggagagagaa
gaggctccctgggagtctttttgcgtgggtgagggcccctccctcaggcaggaggaggca
gagtgtgcctcttctgtccaagacaaagacttcatcactgagggtgaagatggagtagga
cagcaggacttcatgcagacagaggggcgagcggggctcctttacacccctgatacagac
gcctccaaaacgtctgacgctgacgttccccccagctacagcaaggcggtcagcttcgac
cgtctagaaatcagcgacgacgagagcgacacggagaggaaaaggcgtatggtcatgacc
tctgacagccgctcagacagcaggtcagacatcatgctgccctctatgaccactgagctg
accgccagcgaactgctgctcaacaagatgttttatgatgaggagctggagcagtcagat
aaattctacaactgccagcctctgatcctccagctctgctacgccctgtacaacatgctg
gtggcccactcagagatggtgtgctacctggtcatcatcatcaaccacatggtgtcggcc
tcctgcgccaccctggtccttcccatcaccatcttcctctgggccatgctgtccgtgcct
cggcccagtaagcgctactggatgacagccatcgtctacaccgaggtcaccatcgtcatc
aagtacttcttccagtttggcttcttccccttcaaccagaaaagtttagataagaacaaa
ccgtatcaccctcccaacatcatcggtgtggagaagaaggacggttacgtccactacgac
ctggttcagctgctggctctcttcttccacagatccattctgaagtgccacggtctgtgg
gacgaggacgaccccaaagagaagaaggagcctcctcatcagagcgagtccgaggacgag
ggcaaggaggagagtgacaaggagtctgaacctgcctcctcactgatcagtgagaggaga
ggctctggtcaaaccttgaggtccataaacttcgggacctccatagattcaggacacgtc
caggtgcacttcccacagcagcagacctaccagcgtcggaagagctccagcgggggctcg
cacatttctcacagatctcttcactcctctgcgaggtcaaagagaggaagtaccgcttcc
cacaacagcagccgacgggacggcagcgaggccagtgtccatcagaagacccgcaaacag
atgattatggagaagctgagagagcagctctataaagcaaaagctttcatcataaagcgg
gtcctggagatctaccttcccatgaggcagttcttctataacctgatccacccagagtac
agtgcggtcacagacgtctatgtgctgatgttcctcgctgacaccgtcgacttcatcatc
attgtgtttggattctgggcgtttggtaaacactcagcggcagacatcacctcatctctg
tctgaggatcaggtgccaggacctttcctggtcatggtcctgatccagtttgggaccatg
gtggtggaccgggccctctacctcagaaagtctgttttgggcaaagtcatcttccaggtc
atcctggtctttggcatccacttctggatgttctttatcctgccaggagtcacaatgaag
cgattcagtgacaacccagtcgctcagatgtggtattttgtcaagtgcatctacttcggg
ctgtcggcctatcagatccgctgtggttatcccacccgcgtcctgggaaacttcctcacc
aagagctacaattatgtcaacctcttcctgtttcaaggtttccgcctggtgccgtttctg
acggagctgcgagccgtgatggactgggtttggaccgacacctcgctgtctctgtccagc
tggatctgtgtggaggatatctacgctcacatcttcatcctcaagtgctggagagagtct
gagaagagataccctcagccgcgaggccagaagaagaagaaggtggtgaagtacgggatg
ggagggatgattgtgatgctgctcatctgcattgtctggttcccgctgctttttatgtct
ctcgtgaaatctgtcgccggagttgtcaacgcgccactggatgtctcgctcgaaatcacc
ctggccggctttcagcccatcttcaccatgagcgcgcagcaaaaacaactgcaggctgtg
acgcgggaagaatttgaaacatttaccaagaaatatttgggtaacgatgatgccctgcag
tggctggagggctacatgccagaggacctcgtcatcgctcggctgaaaggcaactccaac
tctctgtggaccatcagtccaccgagcagagataacctgaaagacatgttgacctccgac
gaggaatttcccatcactgtgtcctggactgtgcaaaggaacttaagtcttggtgccaag
gctgaaatggcatctggcaaacatgtagcacgaataaacaatgcaacaaaacaggagctc
attaaagtccttcaaggggagggaagcggtttgcaagtgaccctagccgacatcgttcct
cgatacattcgagcccccagtgatgcagatgctaaacctgttgagcagttttctgaagat
gatatgatgatgaacataaccgtgaccttaaagcgaaaaaatgaggcttcttcaaatcag
acccaggaatggtgggttgtcaaccagacagagcccggcatattagacaaaaagagtcca
aaaatggatgaagcagcaggtctggacatctatgtattcagtgaccaagtcagccccccg
agtttgggtttcctggctggatacgggatcatgggcctgtacgcctctgtggttctggtc
atcggcaagttcgtgcgcgagttcttcagcggtatctcccacaccatcatgtttgaggag
ctgcccaacgtggaccgcatcctcaagctgtgcaccgacatcttcctggtccgagagacg
ggggaactggacctggaggaggacatgtacgccaaactcatcttcctctaccgctcgcca
gaaactatgatcaagtggacccgggagaaaactcagtga
DBGET
integrated database retrieval system
