Lates calcarifer (barramundi perch): 108884262
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Entry
108884262 CDS
T04895
Name
(RefSeq) far upstream element-binding protein 1 isoform X1
KO
K13210
far upstream element-binding protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108884262
03041 Spliceosome [BR:
lcf03041
]
108884262
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
108884262
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
108884262
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_2
KH-I_KHDC4-BBP
FUBP_C
KH_KhpA-B
KH_Vigilin
Secretin_N
Motif
Other DBs
NCBI-GeneID:
108884262
NCBI-ProteinID:
XP_018533580
UniProt:
A0A4W6FVF6
LinkDB
All DBs
Position
LG4:complement(5744263..5752650)
Genome browser
AA seq
679 aa
AA seq
DB search
MKPAILSRRAGEEDMADYSSVAPPSSNAGGGMNDAFKDALQRARQIAAKIGGDGVAAPPT
NEFGYGGQKRPLEDAGGYFPMPNLNIDQPETKKVATNDAFSAMGGMGGPPRSTSEEFKVP
DGMVGFIIGRGGEQISRLQQESGCKIQIAPDSGGMPERSVTLTGPPESIQTAKRLLTEIV
EKGRPAPAFHHNDGPGMTVQEIMVPASKAGLVIGKGGETIKSLQERAGVKMVMIQDGPQN
TGADKPLRISGEPFKVQQAKEMVMELIRDQGFREQRGEYGSRIGGGDSLDVPVPRFAVGI
VIGRNGEMIKKIQNDTGVRIQFKPDDGSTPDRIAQIMGPPDQAQHAAEIISDLLRSVQAG
GPPGHGGGRGRGRGQGNWNMGPPGGLQEFTFTVPTMKTGLIIGKGGETIKGISQQSGARI
ELQRNPPPNADPNIKMFTVRGSPQQIDYARQLVEEKIGGPVTPMGGPHGPPGPHGGPGPH
GPPGPPGPPGAPMGPYNPGPYNQGPPGPHGPPAPYQPQGWGNGYPHWQQGQPDPNKAAAD
ANAAAWAAYYAQYSQQPQAPMTPTSGAPGTTQTNGQGDPQAAGQSGQADYTKAWEEYYKK
MGQQSQQPQDYTKAWEEYYKKQGQAAPQATAAAAAAASQPGGQPDYSAAWAEYYRQQAAY
YGTANPQTMGAAPQAPQGQ
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgaaacccgccatcttgtcgcgccgagcaggagaagaagatatggctgactacagcagc
gtggctccgccgtcctctaacgccggtggcgggatgaacgacgcttttaaagacgctctg
cagcgagcacgacagattgcagcaaagatcggtggtgatggcgtggcggcacccccaaca
aatgaatttggctacggaggccagaaaaggcccctggaggacgctggtgggtattttccc
atgcctaacctgaatatcgaccaaccagaaacgaagaaagtggctacaaatgatgccttt
tcagcaatgggaggaatgggcggtcccccaaggtcgacatcagaagaattcaaggttcca
gatggaatggttggatttattattggaagaggaggcgagcaaatatcacgtctgcagcag
gagtctggatgtaaaatacagattgcccctgacagtggagggatgccagagaggtcggtg
acattaacaggaccgccagaatcaatccagactgcaaagaggctactaacagagatagta
gagaagggacgcccagctccagcattccaccacaacgacggcccgggaatgacggttcag
gagattatggtccctgcttctaaagccggacttgtcattggaaagggaggagagaccatc
aaaagccttcaggaaagagcaggagtaaagatggtgatgatccaagatggacctcaaaac
acaggcgcagacaagccactccgcatttcaggagaaccctttaaagttcagcaagccaaa
gagatggtgatggagctgatcagagaccagggcttcagggagcagaggggcgagtacggt
tcaaggatcggaggaggagatagtttagacgttcccgtcccccggtttgcagtaggaatt
gtcattggcagaaacggagagatgatcaagaaaatacagaacgacacaggcgtcaggatt
cagtttaaaccagacgatggtagcacaccagacaggatagcacagatcatgggtcctccc
gaccaggctcaacacgcggcagaaatcatatctgacctgctgaggagcgtccaggccgga
ggacccccgggacatggtggtggcagagggcgtggtcgtgggcagggcaactggaacatg
ggcccccctggtggtctgcaggagtttaccttcaccgtcccaactatgaagactggcctc
atcattggaaaaggtggtgagacaatcaagggcatcagccagcagtctggagccaggatc
gagctgcagaggaatcctccacccaacgcagatcccaacatcaaaatgttcacagtcaga
ggctctcctcaacagatcgactacgcccggcagctggtggaggagaaaatcgggggacca
gtcactccaatgggtggcccccacggtccccctggtccacatggaggtccaggcccacat
ggtccccctggaccaccaggcccccccggggctcccatgggtccgtacaaccctggacca
tacaaccagggacctccaggaccacatggtccacctgcgccttaccagcctcagggatgg
ggcaatggctacccacactggcagcagggacaacctgatccaaataaagcagcagccgat
gccaacgcagcggcgtgggcagcctactatgctcagtacagccaacagccgcaggctccc
atgaccccaacgagcggagcccccggcacgactcaaaccaacggccaaggtgacccacag
gctgcaggtcagagtggacaggcagattacaccaaggcctgggaggaatattacaagaaa
atgggtcaacagagtcaacaacctcaggattacacgaaagcctgggaggagtattacaag
aaacaaggtcaagctgcccctcaggccacagcggcggcggcggcagcagcctcccagccc
ggaggccagcctgactacagcgctgcctgggcggagtactaccggcagcaggctgcatac
tacggcacggccaaccctcagacgatgggtgcagcaccacaagcccctcagggccagtaa
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