Lates calcarifer (barramundi perch): 108884339
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Entry
108884339 CDS
T04895
Name
(RefSeq) zinc finger E-box-binding homeobox 1 isoform X1
KO
K09299
zinc finger homeobox protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108884339
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain ZF
108884339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-Di19
zf-C2H2_jaz
zf-C2H2_6
Homeodomain
zf-C2H2_15
Motif
Other DBs
NCBI-GeneID:
108884339
NCBI-ProteinID:
XP_018533704
UniProt:
A0AAJ7LXA8
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All DBs
Position
LG4:complement(4437049..4496264)
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AA seq
1138 aa
AA seq
DB search
MADGPRCKRRKQANPKRSSVTNFNNGLEASSDSDDEDKLHIVEEDSLQEPEVADADGTAL
QDSHDAATTVLPLNGSWNGVKEECVSEEEDEAVKDALVEEILQQGDTAIIYPEAPEDEQS
PAETGGADENGTPDSFSQLHTCPYCSRGYKRNASLKEHIKYRHETSEDNYSCSHCSYTFT
YRSQLERHMSHHRGTREQRLVSQSTVGSGGTGGTRKFKCTECSKAFKYKHHLKEHLRIHS
GEKPYECSNCKKRFSHSGSYSSHISSKKCVGAAPPNGVARTSIKSPPPTTQTTPVVIAPA
RVILKEKTDSKPLQEQLPVTQIKSEPVEYECKPAMAAPATSAGTNGVVNGGTAQPAAVPA
ATLPQGVAMVVPTVGLMSPISINLNDLQNVLKVAMDGNVLRQVLGTANGVVTQGKQGIVV
QQPQQQIISLPAFVDHDGTTKIIINYSISPAAATTATTQPTPLVVKNNPPPAPAVTSTAA
APTPSKTDKAKTPEAADLTIVKAEPESVPVTDVEAEEDTPAEMEIVKTSDTAQMPKANTT
STCLLCDDCPDNLEALHLLQHRKAANGEAVDSAALDPSFAALLSEAGVTLEEPPVDDLLS
LLKTYFASNANPSEEELTKISESVSIPVDVVRKWFAKMNSGKNMGKNRSDTTAVSKKTET
TNFSSEDTSNQNGEEEDDNQETPNKASSESGSTSPSGSTSQGVNTGDLVIVKSEPEDPEA
PDSQAEPLDLSLPKHIASALETKTTTPPAKQQEQPLNLTCLRKEQLEGRTIYVTTPQTGR
PVNIVTAAQLPTLVAIASQGTVGCLSAINTTTKRTILIPQLTYTYATTAGNASGAKTVVL
NGHKQEKRSDSGSDGVSTVEEQNDSDSAGLTKKRRLENGVYPCDLCSKVFQKGSSLLRHK
YEHTGKRPHECNVCKKAFKHKHHLIEHSRLHSGEKPYQCDKCGKRFSHSGSYSQHMNHRY
SYCKKDGSSSGPGSVPRRAQSELGSPGAGPQSDSRTTTPPSQLDSDERESEEEEDEDDEA
MCMDDIRVVQVDDGECEIYEGNFDDDEEDGEEMEETSREEETGTEKMEKEFVCDVVEIEL
GDDHMEDEEMEERGEEKQEAAAGVETKETADCEANTDTSVREESDSTEPTEEVVTNAK
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atggcggatggccccaggtgtaagcgcagaaaacaggcgaacccgaagaggagcagcgtg
acaaacttcaacaatggcttggaggccagttcagactctgatgacgaggacaagctacac
attgtggaggaggacagcctgcaggagcccgaggtcgctgatgccgatgggaccgcgctg
caggacagccatgacgccgccacaacagtattacccctcaacggctcctggaacggagtg
aaggaggagtgtgtgtcagaagaggaagatgaggcagtgaaggacgctctagtggaggag
atactccagcagggagacacagccatcatctatcctgaggctcccgaggacgagcagagt
ccagcggagacaggaggcgctgatgaaaacggaacaccggattccttctcccagttgcac
acttgcccctactgctcccggggctacaaacgcaacgcctcgctgaaggagcacatcaag
tatcgccacgagaccagcgaggacaactacagctgctcgcactgcagctacaccttcacc
taccgctcgcagctggagaggcacatgagccaccacaggggaaccagggagcagcgtctc
gtttcccagtcgacagtaggatcaggaggaacaggtggaacccgcaagttcaagtgtact
gaatgttccaaggccttcaaatacaagcaccacctgaaggagcacctgcgcattcacagc
ggtgagaaaccatatgaatgctcaaactgcaagaagcgattctcccactcaggctcctac
agctcccacatcagtagtaagaagtgtgtgggtgcagcacctcccaacggcgtcgctcgg
acgtcgatcaagtcccccccacccaccacccagaccacacctgttgtaatcgccccggcc
cgtgtgattcttaaagagaagactgacagtaaaccccttcaggagcagctccccgtcacc
cagatcaaatctgagcctgtggaatacgagtgcaagcccgcgatggcagcgccggcaact
tcagccggtaccaacggagtggtgaacggagggaccgctcaaccagctgcggtccccgct
gcaaccctgcctcagggcgtggccatggtcgtgcccacagtgggcctgatgtcgcccatc
agcatcaatctgaatgacttgcagaatgtgctcaaggttgcgatggacgggaatgtgctc
cgccaggtgctgggtacggctaacggggtggtgacgcaggggaagcaggggattgtggtg
cagcagccgcagcagcagatcatcagcctgccggctttcgtggatcacgacggcaccacg
aagatcatcatcaactacagcatcagccctgcagccgccaccactgccactacccagccc
acacctcttgttgtcaaaaacaaccctcccccagcccccgctgtgactagcactgctgca
gcccccacccccagcaagacagataaagccaagaccccagaggcggctgacctcactatc
gtcaaggcagagccagagtcagtacccgtcacagacgtggaggcagaggaagacacaccg
gcagaaatggaaattgttaaaacttcagacacagctcagatgccaaaagccaacaccacc
agtacatgtttactatgtgacgactgtcccgacaacctggaggcgttgcacctcctccag
caccgtaaagcagccaacggggaggccgtcgactcggccgccctggatccctcgtttgct
gctttgctaagtgaagcaggagtgacgctggaggagccgcccgtggacgacctcctctca
ctcctcaagacctacttcgcctcaaatgccaaccccagcgaggaggagctgacaaagatc
tcagagtctgttagtattccagtggatgtggtcagaaagtggtttgccaagatgaactct
gggaaaaacatgggcaaaaaccgcagtgacactacagcggtctccaaaaagactgaaacc
acgaatttcagctcagaggacacttccaatcagaatggagaggaagaagacgacaaccag
gaaactcccaacaaagcctcatcagaatctggaagcacttctccgtcaggctccacctca
caaggcgtcaacaccggggacctcgtcattgttaaaagcgagccagaggacccagaggcc
ccagactcccaggcagagcccctggacctctccctccctaagcatatcgcatcagcattg
gaaaccaaaacgaccacgcctcccgccaagcagcaggagcagcccctgaacctgacctgc
ctgaggaaggagcagctcgagggtcggaccatctacgtcaccacacctcagaccggaaga
cctgtcaacatcgtcactgccgcacagctgcccacgttagtggccattgctagtcagggc
acagtgggctgtctcagcgccatcaacaccacgacgaagcgaaccatcctcatcccccag
ctcacctacacctacgccactacagccggcaacgcctctggagcaaagactgtcgtactc
aacggccataagcaggagaaacgttcggacagcggctcagacggcgtgtccacggtggag
gagcagaacgactcggactcggccggactgacgaagaagcgacggctggaaaacggcgtc
tacccctgtgatctctgctccaaggtcttccagaagggcagctccctgctcaggcacaaa
tacgaacacacaggaaaacggcctcatgagtgcaacgtctgcaagaaggccttcaaacac
aaacaccacctgatcgaacactcgaggttgcactccggtgagaagccgtaccagtgtgac
aagtgtgggaagcgtttctctcactccggctcatactcccaacacatgaaccaccgctac
tcctactgcaagaaggacgggtccagctccggtcctggttcagtgccacgcagggctcag
tcggagctcggcagtccgggcgccgggccgcagtcggacagccggacaactaccccgccc
tcccaactggactcagatgagagggagagcgaggaagaggaggacgaagacgacgaggcc
atgtgtatggatgacatccgggtcgtgcaggtggatgacggcgagtgcgagatctacgag
ggcaacttcgacgacgacgaggaggacggagaggagatggaagagacgtcgagagaggaa
gagacgggaacagaaaagatggagaaggagtttgtgtgcgacgtggtggagattgagctc
ggggacgatcacatggaggacgaagagatggaggagagaggtgaagaaaagcaggaagca
gcagcaggtgtggaaacaaaggaaacagcagactgtgaagcaaatacggacacgagcgtc
agggaggagtcagacagcaccgaacccacagaggaagtggtgacaaacgccaaataa
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