Lates calcarifer (barramundi perch): 108884349
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Entry
108884349 CDS
T04895
Name
(RefSeq) DNA polymerase delta subunit 3 isoform X1
KO
K03504
DNA polymerase delta subunit 3
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03030
DNA replication
lcf03410
Base excision repair
lcf03420
Nucleotide excision repair
lcf03430
Mismatch repair
lcf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108884349
03410 Base excision repair
108884349
03420 Nucleotide excision repair
108884349
03430 Mismatch repair
108884349
03440 Homologous recombination
108884349
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108884349
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcf03032
]
108884349
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108884349
Protein phosphatases and associated proteins [BR:
lcf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108884349
DNA replication proteins [BR:
lcf03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
108884349
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
108884349
MMR (mismatch excision repair)
DNA polymerase delta complex
108884349
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CDC27
Motif
Other DBs
NCBI-GeneID:
108884349
NCBI-ProteinID:
XP_018533732
UniProt:
A0A4W6C828
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Position
LG4:complement(4272700..4277313)
Genome browser
AA seq
446 aa
AA seq
DB search
MDELYLDNIDEFVNDHNKIVTYKWLSLTLGVHVNTAKQMLYHYLDHKRKESSAQLHATYL
VSGKFVDNGQTSHKISVVREDQLEDFKAKMSLIVSVHVYSVQKALLKDSSPLYSVDYDAV
KDNLKNCSKYSAIHCTSAVPMSSLELQQRREMQRAPTPEPAVKKTGMNGEANLASKPSTK
PPKGIMGMFGNKAAPKNQDSGKEVKLEQKEDAPVADAPKSKPAAKTNPMINFFGTQTAKK
PDNKTVKVEEAAQTLSTAEQQHQGSQPEEKHEAAAVESPKDIKKDSRSKTKRIEDSDSEE
EKMEKKKRRRIKKPEPDSSDEDVIPDSPQQMETREKSPSPVKEVESVSHSHQGVSEVKIR
KRRRVLKSRTFVDDEGCIVTEKGYESESYSEAEDDAQATKQAPKGPVPAKLPASSKEGEK
KSQKKMSANANKGTKQASIMGFFQKK
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggacgagctttatttggataatattgacgaatttgtcaacgaccacaacaagatagtg
acctacaaatggctgagtctaacacttggagtccatgtcaacacagcaaaacaaatgctc
taccactacctggatcacaagaggaaagaaagttcagctcagctccatgccacctatctc
gtgtcggggaagtttgtggacaacggccagacgagccacaagatatcagttgtcagagag
gaccaactggaagatttcaaagccaagatgagcttgattgtgagtgtccatgtctacagt
gtccagaaagctttactgaaagacagcagccccctctacagcgtcgactatgatgccgtg
aaagacaacctgaagaactgcagcaaatacagtgcgatccactgcaccagtgcagtgccc
atgtcctctctggagctgcagcagaggagagaaatgcagcgggcgcctacaccagagcct
gcagtaaaaaaaactggcatgaacggagaggctaatctggcttcgaaaccatccaccaaa
ccgccaaaaggcatcatgggaatgtttggaaataaagctgctcccaagaaccaggacagt
ggcaaagaggtcaagttggaacagaaggaagatgcacctgtggctgatgcccccaaaagc
aaaccagctgcaaaaaccaatccgatgattaacttttttgggactcaaacagcaaagaaa
cctgacaacaaaactgtgaaggtggaggaagcagctcagacgttaagcacagcagagcag
caacaccagggttcacagcctgaagaaaaacacgaagctgctgcagtggaatcaccaaaa
gacattaagaaagattccaggagcaaaaccaagcgaattgaagattctgacagtgaggag
gaaaaaatggagaagaaaaaaaggcggaggattaagaaacctgaaccagacagcagcgat
gaagatgttattccagattctccacagcagatggagacaagggaaaaatcaccaagtcct
gtcaaggaggtcgagtccgtttcacattcacatcagggtgtctctgaagtgaagataagg
aagaggagacgggtcctgaaatctcgcacctttgtggacgacgaaggatgcatcgtgacc
gagaaaggctacgagagtgaatcgtactctgaggcagaagacgatgctcaggccaccaaa
caagctccaaagggtcccgtccctgcaaaactaccagcaagtagcaaagagggtgagaag
aaaagtcagaagaaaatgtctgccaacgcaaataaaggaactaaacaagcttccattatg
ggatttttccaaaagaaataa
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