Lates calcarifer (barramundi perch): 108884421
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Entry
108884421 CDS
T04895
Symbol
si:ch211-214p13.3
Name
(RefSeq) nectin-1 isoform X2
KO
K06081
poliovirus receptor-related protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03266
Virion - Herpesvirus
lcf04514
Cell adhesion molecule (CAM) interaction
lcf04517
IgSF CAM signaling
lcf04520
Adherens junction
lcf05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
108884421 (si:ch211-214p13.3)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
108884421 (si:ch211-214p13.3)
04517 IgSF CAM signaling
108884421 (si:ch211-214p13.3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
108884421 (si:ch211-214p13.3)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108884421 (si:ch211-214p13.3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108884421 (si:ch211-214p13.3)
04090 CD molecules [BR:
lcf04090
]
108884421 (si:ch211-214p13.3)
Cell adhesion molecules [BR:
lcf04515
]
Immunoglobulin superfamily
Nectin family
108884421 (si:ch211-214p13.3)
CD molecules [BR:
lcf04090
]
Proteins
108884421 (si:ch211-214p13.3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
ig
V-set
I-set
C2-set_2
Ig_2
C2-set_3
Ig_4
C1-set
DAP10
YjcB
Motif
Other DBs
NCBI-GeneID:
108884421
NCBI-ProteinID:
XP_018533805
UniProt:
A0AAJ7LWB7
LinkDB
All DBs
Position
LG1:15955117..15974042
Genome browser
AA seq
423 aa
AA seq
DB search
MEALPVFVSLRSNFYERSSSRQVSGCTRLTLLFVLIFNLSRCSSALRVIGGNITEVQGET
VVLPCKLIDTTETLTQISWQRMTRGKPQNDNFYTITSQNGPQFVNGRDDRFQIIGNFSDK
NGSIQLSNVTLLDEGVYTCIFTLFPSGNHETKIPLNLLVPPVTSLSHNHAVLGNEEVSLA
TCTAAGSRPPAEVRWLTGTLAEKVRATDSSTQHSNGTTTTVSSLFGVPTKEINQHVVQCV
VTNPALSKEETMSFTIQVYFSPMGVYIGEKSKDSFRCVTEANPSANFTWRRPGHSFPQPG
VRVEGATLQFLSMSSDLNGLYQCEASNLYGKDSGYLYVHMTSGACSACWALFSLLLIAIV
AAAAVWYLYKSGKLTRMPGGTREEMQKVRKTSSGSEEPQRVEEEVEEEADETAVAVQETQ
RSR
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggaggctctccctgtatttgtgtctcttaggagcaacttttacgagcgatcatcatcg
cgtcaagtctccggctgcaccagactaacgctgctgttcgtgctcatcttcaacctgagc
agatgttcgagcgctctccgggtgattggaggaaacatcaccgaggtgcaaggagagact
gttgtcttaccatgcaaacttattgacaccacggaaacccttactcagatttcatggcaa
aggatgaccagaggaaaaccccagaatgacaatttctatactatcacatcccaaaatgga
ccacagtttgtcaatggacgcgatgatcgatttcaaattattggaaactttagtgataaa
aatggatctatccagttatcgaatgtcacattgctggatgagggtgtctacacgtgcatc
ttcactttgttccccagtggaaatcatgaaaccaagatacctttaaacctgcttgtccct
ccggtcacatctctcagccataatcatgctgttttgggtaatgaagaggtttcccttgct
acctgcacggctgctggttccaggcctcctgcagaggtgaggtggctcactggtactctg
gcagaaaaagtgagagcaacggacagctccacccaacactccaacggtacaaccaccaca
gtcagctcactgtttggagttcctacaaaagaaatcaaccaacatgtggtccagtgtgtc
gtcaccaatccagccctgtcgaaagaggaaacaatgtccttcaccatacaggtctacttt
tcacccatgggagtgtacattggagaaaaatctaaagattcatttcggtgtgtgactgaa
gccaacccgagtgcaaattttacctggagaagacctggccattcatttcctcagcctggt
gtcagagtagagggtgcaacactgcagtttctgagcatgagctctgacctgaatggcctc
taccagtgtgaagcatctaacctgtatggaaaggacagtggttacctctatgtgcatatg
acttcaggagcctgcagtgcttgttgggccttatttagccttttgctgattgccattgtt
gctgctgctgctgtatggtacctttataaatctgggaaactcacaaggatgccagggggc
acacgtgaggagatgcaaaaggtccgaaaaacctccagcggatctgaagaacctcaaaga
gtagaagaagaagtagaagaagaagctgatgaaacagcagttgcggtacaagagacacag
agatctcgttga
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