Lates calcarifer (barramundi perch): 108884455
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Entry
108884455 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: integrin alpha-M-like
KO
K06461
integrin alpha M
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04145
Phagosome
lcf04514
Cell adhesion molecules
lcf04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108884455
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
108884455
09142 Cell motility
04810 Regulation of actin cytoskeleton
108884455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108884455
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108884455
04515 Cell adhesion molecules [BR:
lcf04515
]
108884455
04090 CD molecules [BR:
lcf04090
]
108884455
00536 Glycosaminoglycan binding proteins [BR:
lcf00536
]
108884455
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
108884455
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108884455
Cell adhesion molecules [BR:
lcf04515
]
Integrins
Integrin alpha subunits
108884455
CD molecules [BR:
lcf04090
]
Proteins
108884455
Glycosaminoglycan binding proteins [BR:
lcf00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
108884455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
ITGAX-like_Ig_3
FG-GAP
Integrin_A_Ig_2
VWA_2
Integrin_A_Ig_1
FG-GAP_3
FG-GAP_2
Motif
Other DBs
NCBI-GeneID:
108884455
NCBI-ProteinID:
XP_018533861
UniProt:
A0AAJ7LYQ9
LinkDB
All DBs
Position
LG23:complement(8557755..8569804)
Genome browser
AA seq
1138 aa
AA seq
DB search
MDWIIITTLFLSVLNIALCFNVDPVAWKSWSTTAAGFGYQVVQRQSDLLVSAPLEQYSQD
GRGQIYKCSLGTCQNLQVQVPNFAVNMSLGLTMIADPTTQNTMVCGPTIPKDCRSITMYN
GVCFQIDRSNRLGPPVPSSLQECRTEADIAFLLDGSGSVSSQDFQTMKTFVKNLVRSFVG
KGTQFAVAQYSSSPHIHYYFDDFFKSGNWKSNIDYINQMREGTYTAKAIKSVVNNVFTPL
RGSRSNVKRILIVITDGASHDRAELPHVARLAERENIVRFAIGVGAAFNDVGARGELATI
ASYPSKNHVFQVQSFDALDAIRQNLQDKIFSIEGSQSSGESLKMEMAQEGFSAAYIPGGV
QTAIVGANQWKGGYLKYTSRGQKQSSYEPTSMEPDSYLGYSMAVGKTKEGTLTIVGAPRY
QHRGIVMGVQENERSQTIDPHPWQSQTGEYFGAEVCAMDVDRDSYTDLILISAPMYTDTD
REGRVYVCSLVRLNVECHFESPVVLRGDVSDRGRFGSSLAVLPDLNADGLSDLAVGAPLE
NDGQGSIYIFLGEGGRTVRSTYSQRIPASEVKSGLKFFGISISQSSFDQSVDSLPDLVVG
SKGTVVLLRSKPIVMVEVTVSYSPKQIPSQNDDCTKPLENTAEICFTMSRVSTVNTARAT
IRYNFTLDATRKVPNNRAYITDKQREKTESLAINLGQRQCSRVKFFIDACPEDALNSLSN
ELRFTFDGVLSDTNLKPSLAQDAKTTAIYPIGFEINCGTDNKCVDNLKVDFNFTSSSVVK
VGIDELLDVTVSVENREENSYNSRVILTYPAELSYRKFTSLQGRIECNSVDSEDGLSRGK
TECTIDKPIFKNRAKAFFTVSYGIETNSQLERRIFVTANATSGNQYQSPSSELYKKEWID
VKYSIFVTFESTLSYTNFTFGKNNLQKPIQQTIVVTNDIRALNFTVVIKVPVKLGDKDIW
VDSNSLQIPDCQRDRDEEPNVTDFVAQIQKNTVVDCSVAKCRVFKCTRFMGRSERKNYII
SANLSSGWIEQIGLKSAKFLLTSTASLEYDSNQFIFFSTGSNNNPPIRKIEAEIEVYSEP
DFTKEIVGGTLGGLVLLAALTAGLYKAGFFKSKYKEMINEGAEGADPQADGAATSPEA
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atggactggataattattactacactattcttgtcagtgctaaatattgcactttgtttc
aatgtcgatcctgtggcttggaagtcctggagtaccacagctgcaggttttggctaccag
gtggtgcaaagacagtcagatttgcttgtcagtgctcccctggaacagtattcacaggat
ggaagggggcaaatatataagtgttcccttggaacctgccaaaatctacaagttcaagtg
ccaaattttgcagtcaatatgtcccttggtttgacaatgatagctgaccccaccacacaa
aacactatggtctgtggcccaaccatccctaaggattgcagaagtatcaccatgtacaac
ggtgtgtgctttcagatagaccggtctaatcgtcttggacctccagtgccttcttcactt
caagagtgtcgaactgaagcagacattgcatttctgttggacggttcaggcagcgtatcc
agtcaagactttcaaacaatgaagacttttgtgaaaaatctggtccgctcgttcgtggga
aaaggcacacagtttgctgtcgctcagtattctagttcacctcatatccactattacttt
gatgactttttcaaatctggaaactggaagtctaacattgattacataaatcaaatgagg
gagggaacttacacagctaaggccatcaaatccgtggtcaacaatgttttcacaccacta
agaggttccagatcaaatgtgaagaggatcctgatagtcattactgatggagcgtctcat
gaccgagctgaattgccacatgtagcaagattagctgagcgtgaaaacattgtgcgtttt
gcgatcggggtgggggctgcatttaatgatgttggagcaagaggggaactggctaccatt
gcatcttatccctcaaaaaatcatgtgtttcaagtacagagctttgatgcacttgacgca
ataagacagaatctgcaggacaaaatattttctattgaagggtctcagtccagtggagag
tcactgaaaatggaaatggctcaggaaggattcagtgctgcttatataccagggggagtt
cagacggctattgttggtgccaaccagtggaaaggaggatacctgaaatacacaagtcga
ggccagaagcagagctcatatgagcctacgtctatggagcctgacagttatctgggttac
tccatggcagtgggtaaaaccaaagaaggcacattgacaattgttggtgctccaagatat
caacacagaggaattgtgatgggagttcaagaaaacgagagaagccagacaattgatcca
catccatggcagtctcagactggtgaatattttggggcagaggtttgtgccatggatgtg
gatcgtgacagctacactgacctaatcctcatatctgcccccatgtacacagacactgac
agagagggaagagtttacgtttgcagtttagttcgtttgaatgtcgagtgtcactttgag
tctccggtagttctgagaggggatgtatctgacagaggaaggtttggctcttctcttgct
gtgctgcctgatcttaatgcagatggactcagtgatttggcagttggagcacctttggag
aatgacggtcagggcagcatctacatattcctcggtgaaggaggaagaacagtccgttct
acgtactcacagaggattcctgcatctgaagtaaagtcaggactgaagttttttggtata
tcgatcagtcagtcatcttttgaccagagtgtggacagcctgcctgatctggtggtgggt
tcaaagggcacagttgtcttactgagatcaaagcctatagtaatggtagaagtaacagtg
tcatacagcccgaaacaaatcccttctcaaaacgatgactgcacaaaaccactggagaac
acagctgaaatctgctttaccatgtccagagtctccacagtaaacacagctcgagcaacg
attcgttataatttcacactggatgccactcgtaaggtcccaaacaacagagcttacatc
actgacaaacaacgtgagaagacagaatcattggctattaacttaggacagcgacaatgt
tccagggtgaaattctttattgatgcttgtccagaagatgctctcaattcactcagcaat
gagctcagattcacctttgatggtgtgctctctgatacaaatctcaaaccaagtctcgct
caggacgctaaaacaacagccatttaccctatagggtttgagatcaactgcggcactgac
aacaaatgtgtagataacctgaaagtagatttcaacttcaccagttcctcagtggttaaa
gtgggcattgatgaactgttggatgtcaccgtatcagtggagaacagagaggaaaactcc
tacaacagccgtgttattctcacatacccagctgagctgtcctacaggaagttcacaagt
ctgcagggaagaattgaatgcaactctgtggacagtgaagacggcttatcacgaggaaag
acagagtgcacaattgacaagcctattttcaagaacagagctaaggctttcttcactgtc
tcctatgggattgaaaccaacagtcaacttgagaggaggatttttgtcacggctaacgct
accagtgggaatcagtatcaatccccttcaagtgaactttacaaaaaggaatggattgat
gtgaagtacagcatatttgttacatttgaaagtaccctcagctacaccaatttcactttt
ggaaagaataatttgcagaaaccaatccaacaaacaattgtggttacaaatgacatcaga
gcgttgaatttcactgtagtgatcaaggtgccagtaaagcttggtgataaagacatctgg
gtggattcgaacagtttgcagattccagactgccaaagagacagagatgaagaacctaat
gtcacagattttgttgctcagatacagaaaaatacagtagtggactgctctgtagccaag
tgcagagtgttcaagtgcacaaggttcatgggaagatccgaaagaaagaactacataatc
tctgccaaccttagctcaggatggatagagcagattggacttaagtctgccaagttcctt
ttgaccagcacagccagtctggagtacgacagtaaccagttcatcttcttttcaacaggg
tctaataacaaccctcccattcgcaagattgaggcagagatagaggtgtattcagaacca
gacttcaccaaagagattgttggaggaacgctaggagggttggttttactggctgcactc
actgctggcctgtataaggctggatttttcaagagtaaatacaaggagatgattaatgaa
ggagcagaaggagcagatccacaggccgatggagctgcgacctcaccagaagcataa
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