Lates calcarifer (barramundi perch): 108884499
Help
Entry
108884499 CDS
T04895
Name
(RefSeq) polypyrimidine tract-binding protein 2 isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108884499
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
108884499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
108884499
NCBI-ProteinID:
XP_018533922
UniProt:
A0A4W6E9E2
LinkDB
All DBs
Position
LG4:22765716..22782434
Genome browser
AA seq
523 aa
AA seq
DB search
MDGDVAVGVKRGSDELNMYGSSPNSMTANGSDSKKQRLDESPPSRVLHIRKLPNEVSETE
VIALGLPFGKVTNILMLKGKNQAFLELGTEEAAITMVNYYTAVTPQVRNTPVFIQYSNHK
ELKTDSALNQRAQAVLQAVSAVQDGSSPSSDPGVLDLAPPPSPVLRIIIDNMFYPVTLDV
LQQIFSKFGTVMKIITFTKNNQFQALLQFSDPVNAQQAKLSLDGQNIYNSCCTLRIDFSK
LVNLNVKYNNDKSRDYTRPDLPTGDGEATNKDHSLLGTPSGALASYSSGGSYSSSLSLSQ
GGGAISPLSAAAAAAAAAGRVALSGSGVSGVLLASNLNEEMVTPQSLFTLFGVYGDVQRV
KILYNKKDSALIQLSDGNQAQLAMSHLNGQKVFGKVMRVTLSKHQTVALPREGLDDQLLT
KDFSGSPLHRFKKPGSKNFQNIFPPSATLHLSNIRDGVGEDDLRLLFSNSGGTVKAFKFF
QDRKMALIQMSSVEEAIQALMDLHNYDMGGNHHLKVSFSKSTI
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggacggagatgttgcagttggtgtgaagagaggctcagatgagctcaacatgtatggt
agcagccccaactctatgaccgctaatggcagtgacagtaagaagcagcgtctggatgaa
tcacctccctccagagttctccacatcaggaaacttcccaatgaagtgtcagagactgaa
gtcattgctctggggctgccctttggaaaggtcaccaacatactgatgctgaaggggaaa
aatcaggcatttctggagttgggtacagaggaagcagccattactatggtgaactactac
acagctgtcacaccacaggttagaaacacacctgtcttcatccagtactccaaccacaag
gaactcaaaacagactccgctctgaaccagagggcccaggcagtgctacaggcagtgtca
gcagttcaggatggaagctctccatcttctgacccaggagttctggacctcgctcctccc
cccagccctgtcctgcgaattattattgacaacatgttctatcctgtgacactggacgtt
cttcaacagatctttagtaaatttgggactgtgatgaagattatcaccttcaccaagaac
aaccagtttcaggctctgctgcagttcagtgatcctgtcaatgcacaacaagctaagctg
tctttggatggacagaacatctataattcatgctgtactctgcggatagacttcagtaaa
ctggtcaacctcaatgtcaaatacaacaatgataagagtcgagactacaccagacctgac
cttcctactggagatggagaggcaaccaacaaggatcattctttattgggtaccccatct
ggagcgctagcttcctactctagtggaggaagttactcatcttctctctccctctcgcag
ggtggaggagccattagtcctctgagtgctgcagcagcggcagcagcagcagcaggtcga
gttgctctgtctgggtctggagtgtcaggagtcctgttggcgtccaacctaaatgaagag
atggtcacgcctcaaagtctctttaccctcttcggagtctatggtgatgtccagagggtg
aagatcctctacaacaaaaaggacagcgctctgatccagctgtctgatggcaaccaggct
cagctggctatgagtcacctgaatggtcaaaaggtgtttggtaaagtgatgagagtgacg
ctgtccaaacatcaaactgtggctctgcccagagaaggactggatgaccagctgctaact
aaagatttctctggctctccactccatcgctttaagaaaccaggatccaagaacttccag
aatatctttcctccctctgcaacacttcatctctccaatatcagggatggtgttggagag
gatgatctgcgtcttctgttctctaacagtggaggaacagtcaaggccttcaagttcttc
caggaccgtaagatggccttgatccagatgtcctcagtagaggaggcaatccaggctctg
atggatcttcacaactatgacatgggagggaatcaccatctaaaagtttccttttcaaag
tccaccatctaa
DBGET
integrated database retrieval system
