Lates calcarifer (barramundi perch): 108884506
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Entry
108884506 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: VPS10 domain-containing receptor SorCS3
KO
K27083
VPS10 domain-containing receptor SorCS3
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108884506
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Others
Others
108884506
Endosome - Lysosome transport
108884506
Endosome - Golgi transport
108884506
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
Motif
Other DBs
NCBI-GeneID:
108884506
NCBI-ProteinID:
XP_050926848
UniProt:
A0AAJ8DQ64
LinkDB
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Position
LG5:27918169..28120467
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AA seq
1234 aa
AA seq
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METWAGFCPGLHLSVGIWVMIAALTLQNAKAEITCACCPSPVQLHLEKLRLGMRTDPTEE
PSTLEFKEVGATDQNIGVDDDHETGDSIEDVPLFPQDVSLDGVSTTEHTPGSSEESHRGN
VEEREDAALRRAKRSGPEFAEFSEGRWTGRTGVDAGAPEDRGSLLDGQKQGRSEFRWNRD
EGRGNTRQEEPKLTSSTFALTGDSAHNHAVVYWSGQNSSVILILTKLYDFHIGSVTESTL
WRSTDYGSTYERMNDKVGSKTVLSYLYVCPTNKRKIMVLTDPEFESSVLISSDEGASYQK
YRLTFYILSLLFHPSEEDWALAYSHDQKLYSSVDFGRKWQLIHEHVTPNRFYWSVLGLDK
EPDLVHMEAHTPDGNVQYVTCKAQMCTEANRNYPFPGYIDISSLVVQDDYIFIQVPTSGR
ATYYVSYKRDSFIQIKLPKYSLPKDLHIVSTDEKQVFAAVQEWNQNDTYNLYLSDTKGIY
FTLAMENVKTTRGIGGNQMLDLYEVAGIKGMLIANKRQDNQVKTYITYNKGRDWRLLQAP
ATDLDGNDIHCILPFCSLHLQLQMSENPYLSGTISTKDSAPGIIVATGNIGAELSYNNVG
MFISSDAGNSWRQIFEEEHNVWFLDKGGALVAVKQPSVPTRHLWVSFDEGRQWIQHSFSS
VPLFVDGVLVEAGAENQIMTFFGHFSHRSEWQLIKIDYKSIFSRKCTEEDYQTWHLHNQG
EPCVMGQKQIYMKRRPGNYCMLGKDYSRILSAESCICRAHDFECDYGYERRGDGNCRPAF
WFNPSTVSRSCSQGQNYLNSTGYRKVVLNNCTKGVKEMYTARKQQCPNRPPKGLVLTTKD
GKLTANLGSNVTFLVHLDEGDSLRTNIQLDFGDGTAVSYSNLSWTEEGIKHVYKSAGIFR
VTALAENTLGYDTTTLFLHVTCPVEHVQLLAPFVVIRNKEVNITAVVLPSHSRTVTYFWW
LGNNTEPVITLDGSISFTFPNEGMHTITVQVAAANTMLQDTKTIAVKEFFKSLLLSFSPN
LDEFNPDIPEWRQDVGRVIKKALLQVSDFPEEQLLVAVFPGVPTAAELFLLPHKNQTEGK
KKSEEELEQVSNIIVSALNQNLVEFELKPGVRVIVYNTQLTLAPLVDSNPRHSSSAMLML
LSVVFLGLAVFLIYKFKRKIPWINIYAEVNQEKEQEMIGSVGQGESTPKITLSEFSTSKE
LMEKELDCQGQKXVKRGVGNACESTREIPNCTSV
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atggagacttgggctggcttctgcccaggactgcacttatctgtgggtatctgggtgatg
atagccgctcttactctgcaaaatgccaaggcggagataacttgcgcatgttgcccgtcg
ccagttcaacttcacctggagaaattacggctggggatgcgcactgacccgacagaggaa
ccgagcaccctagagtttaaggaagtcggggctaccgaccaaaatattggagtggacgac
gaccacgagacaggcgattctatcgaggatgttcccctgttcccccaagatgtcagtttg
gatggagtcagcacaacggaacatacaccagggtccagtgaagaaagtcaccgcggcaat
gttgaggaaagagaggatgctgcgctccggagagcgaagaggagcggtcctgagtttgcc
gagttcagtgagggcaggtggaccggtcggactggcgtggatgcgggtgctccggaggat
cgtggctcgttgttagacggacagaagcagggcaggtccgagttcagatggaacagggac
gaagggagaggaaatacccggcaggaagagcccaagctcactagcagcactttcgctctg
actggggactctgcgcataaccacgcggtggtctactggtcaggacaaaacagcagcgtg
atcctgattctaaccaagctgtacgactttcatattggcagtgtcactgagagcactctt
tggagatccactgactatggctccacatatgagagaatgaatgacaaagtcggatccaag
actgtcctgagttacctctatgtctgtccaaccaacaagagaaagattatggtgttgaca
gatccggagtttgagagcagtgtgctcatcagctctgatgagggagccagttaccagaag
taccgtctcacattctacatccttagccttttattccatcccagtgaagaggactgggcc
ttagcctacagccacgaccaaaagttatacagctccgtggactttggacgaaaatggcag
ctcatccacgaacatgtcacaccgaacaggttctactggtctgtcttgggcctagacaag
gagccagatctggtccacatggaggctcacacaccagatggaaatgtgcagtatgtcaca
tgcaaagctcagatgtgcacagaagctaacaggaactacccattccctggatacattgac
atcagctctttggtggttcaagatgactatatattcatacaggttcctacatcaggtcga
gctacctattatgtgtcctacaagagagactcttttatacagatcaaactgcccaaatat
tccctgcctaaggatttacacattgtcagcactgatgagaagcaggtttttgcggctgtg
caggagtggaaccagaacgacacctataacctctacctgtctgacaccaaggggatctac
ttcaccttggccatggagaatgtaaagaccactagaggcattggagggaaccagatgcta
gacctgtatgaggtggcaggaattaaaggcatgctaatagctaacaagaggcaagacaac
caggtgaagacctacatcacctacaacaagggccgggactggaggctcctgcaggcccct
gctactgatctggatggaaacgacatccattgcatactgcctttctgttcacttcatctc
cagttgcaaatgtcagagaacccatacttgtcaggaacaatctccaccaaggactctgca
ccaggaatcatagttgccacaggaaatattggagcagagctttcttacaacaacgttggc
atgttcatatcatctgatgctggcaatagctggagacagattttcgaagaggagcacaat
gtgtggtttctggataaaggaggggcccttgtcgctgtgaaacagccgtctgtgccaacc
agacacttgtgggtcagctttgatgagggaaggcagtggatccaacatagcttctcctct
gtgccattgttcgtggatggagtcttggtggaggctggggccgagaaccaaatcatgacc
ttttttggacacttcagccaccgttctgaatggcagctcattaagatagactacaagtcc
atcttcagcaggaaatgcaccgaggaggactatcaaacctggcacctacacaaccagggt
gagccatgcgtgatgggacaaaaacagatttacatgaagcgtaggcctggaaactattgt
atgctgggaaaagactactcccgaatcctctcagcggagtcctgtatttgcagagctcat
gattttgaatgtgattatggatatgaacggcgtggggacgggaactgccggcctgcattc
tggttcaatccctctactgtgtccagaagctgcagccagggccaaaattacctcaacagc
acagggtatcgcaaagtggtcttgaacaactgcactaaaggagtgaaagaaatgtacacg
gcaagaaagcagcagtgccccaacagacctcctaaaggactcgtactgaccaccaaagat
ggcaaactcactgctaacctgggcagcaacgtcacctttctggtgcatctggatgagggt
gactctttgcgcaccaacatccagctggattttggcgacggcacagctgtgtcctattcc
aacttgagctggactgaggaggggatcaaacacgtctacaagtctgctgggatattccgt
gttacagcgttggcagagaacaccctgggttatgacaccacaacactcttcctgcatgtt
acatgtccagtggagcatgtccagcttcttgctcccttcgtggtcataagaaacaaggag
gtgaacatcacagcagtggtcttacccagccactcacgcactgtcacctacttctggtgg
ctaggcaacaatactgagccagtgataacattggatgggagtatctcattcaccttccct
aacgagggaatgcacaccattacagtccaagtggctgcagccaacactatgctgcaggat
accaagaccatagcagtcaaagaattcttcaaatctctacttttatctttctcccctaat
ctggacgagttcaaccctgacatacccgagtggagacaggatgtggggagagtaattaag
aaggctctgctccaagtgtctgacttcccggaggagcagctcttggtagctgtgttcccg
ggagttccaacagctgctgagctctttcttttacctcacaagaaccaaacagagggcaag
aaaaagagtgaggaggagctagagcaggtttccaatattattgtaagcgcactgaaccaa
aatttggtggagtttgagctcaagcctggtgtaagggtgattgtgtacaacacacagtta
acgctggcacccttggtggactccaaccccagacacagcagctcggctatgctgatgctc
ctttcagtagtgttcctgggcctagcagtgttcctcatctacaaattcaagagaaaaata
ccttggatcaacatatatgctgaggtgaaccaggagaaggagcaggagatgattggctcg
gtgggccagggcgaaagcacgcctaaaattactctgagtgagttctccacatccaaggaa
ctcatggaaaaggaactggattgccagggtcaaaagtaagtgaagaggggagttggaaac
gcctgtgagagcacaagggagattccaaactgtactagtgtgtaa
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