Lates calcarifer (barramundi perch): 108884519
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Entry
108884519 CDS
T04895
Symbol
rims1b
Name
(RefSeq) regulating synaptic membrane exocytosis protein 1 isoform X1
KO
K15291
regulating synaptic membrane exocytosis protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108884519 (rims1b)
Membrane trafficking [BR:
lcf04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
108884519 (rims1b)
Small GTPases and associated proteins
Rab associated proteins
108884519 (rims1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RIM2a_ZnF
FYVE_2
PDZ
PDZ_6
Motif
Other DBs
NCBI-GeneID:
108884519
NCBI-ProteinID:
XP_050926837
UniProt:
A0AAJ8B5M9
LinkDB
All DBs
Position
LG5:27245062..27315997
Genome browser
AA seq
1564 aa
AA seq
DB search
MSASVGPQGGPRPPTVPPSMPDLPDLSHLTEEERKIIMAVMARQKEEEEKEQAMLKTLHQ
QFESYKQEVRRIGAETRRQQTQQKDDAPTCGICRKTKFADGCGHLCSYCQTKFCARCGGR
VSLRSNNVMWVCNLCRKQQEILTKSGEWFSGSGMRPGSLGTSLNDPATGGEAQRDRKLLR
SRSQAPPSSTNAGPNGTQPPAGITPAKGADTMPGSRSQSEPPREKKRPVSLHEQNGKGGM
GRGSGRRPAGKLPAQSSLDERVVSGDRGERRLGEGRRLEKIHSQDYEDGEANFSCSETHR
RRPEDEEQRERQRREEEFQNRYRSDPNLARYPVKPQKEEQEMRMHAKVSKVRHERRHSDL
AINEVGLGPGEGGGGGGSAGEVPENRLARRGGGGEGDRKALLENHRAYSVDRTVGGGGGP
PTAGGGLRSGPQPGVQAPPDWGPNKGRLEPGTTRTPRDKGGDNLLRKDSQSSDQSESLRP
PPPRSYKSKRGVNKRQMSISSSEEEGGSTPEYTSCEDVDMESVSEKGDWDCHPLDPTVWH
HPVTWQPSKEGDHLIGRITLSKRSAMPREAGSLLGLKVVGGKMTETGRLGAFITKVKKGS
LADVVGHLRAGDEVLQWNGKSLPGATKKEVYNIILESKAEPQVEIVVSRPIGDIPRIPES
PHPPLESSSSSFESPKMDRPSISVMSPTSPGTLRDLPLVLPGQLSVKLWYDKVGHQLIVN
VLQAIDLPPRPDGRPRNPYVKMYFLPDRSDKSKRRTKTVKKSAEPKWNQTFIYSHVHRRD
FRERMLEITVWDQPRVQEEESEFLGEILIELETALLDDIPHWYKLQTHDVSSIPLPQPSP
YLPRRHVHGDSPSKKLQSAERNSRERERGSTLAVPEQQRPVQHRSRSVSPHREDSCRARS
RPAHVPMQRSLDEIHQNRHHSHSPSRYHDSHLEHQRSGDSDYEYSEDSEVLEMHRSIRGG
SAECLHTNSSTLPACLKSKPPHRQEGVSTMPRSILTHRVLRFTDEVTVSDLQPSLDRVRS
ASTTCLRPDTNFHSPDRDRCSNSLPRKTPPSPRILVEHVAPEEDRQSNNSSSPNCNRGSK
KNLEGDSRIQPTSILRGSRGRGGPLRPFGQTALAGSCPNSPRLDRAHPHGSPSPPTGTPS
SGRRGRQLPQLPAKSSSIEQALAVEERARLPRAQLQMKVHSYRPSASHDPETDLKTKREM
YAELRRSSDNMSARSSDSDMSDVSALSRASSASRLSSTSYMSIQSERPGGRLSRQMRSSM
GRSMLKSSSVSGEIYTQERTDGSQSDTALGTVGGGSKKRRSSLSARVVAIVGNRRSRSTS
QISGPEGKSKKEKGAPIQRSTETGMAVELTRNMSRQPSRESNNGSMNSYNSEGNLIFSGV
NVGASSQFSDFLDGLGPAQLVGRQTLATPAIGDIQIGMMEKKGQLEVEVIRARGLVQKPG
SKSLPAPYVKVYLLNNGAYVAKKKTKIARKTLDPLYQQALLFEESPQGKVLQVIVWGDYG
RMDHKSFMGVAQILLEELDLSSTVIGWYKLFPPSSLVDPTLASLTRRASQSSLDSSSGPP
GVRS
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcctcggtggggccccagggcggccctcgcccacccaccgtgccgccatccatg
ccggatctgccggacctcagccacctcaccgaggaggagaggaagatcatcatggcagtg
atggctcggcaaaaggaggaggaggagaaagaacaagccatgctaaaaacactgcaccag
cagtttgagagctacaaacaggaggtgcgtcgcatcggggcggagacaaggcgtcagcag
acccagcagaaggatgacgcgcccacctgcggtatctgccgcaagaccaagtttgccgac
ggctgcggccacctctgctcctactgccagaccaaattctgtgctcgctgtggagggcgg
gtctctctgcgctccaacaatgtaatgtgggtatgcaacctgtgccgtaagcagcaggag
attctcaccaaatcaggagaatggttttcggggtcggggatgcggcctgggagcctgggc
acctccttgaacgacccagccacgggaggtgaggcccaacgggacaggaagcttctccgc
tccaggtcccaagccccgccttcaagcaccaacgcagggccaaacgggacacagccgccc
gctggtatcacacctgccaagggtgctgacactatgcctggctctcgctcccaaagtgaa
ccacctagagaaaagaaaaggccagtttccctccatgaacaaaatggtaagggaggcatg
gggcgtggtagtggccggagacctgctgggaagttgccggcccagtcgtccctggatgag
cgggtggtctctggagacagaggagagagacggttgggagagggacggagactggagaag
atccattctcaggactatgaggatggggaggcgaacttcagttgttcagagacacaccgg
agacgtccagaggatgaggagcagagggagcgacagcgccgcgaagaggagttccagaat
cgttaccgtagtgaccccaacctggctcgatacccagtgaaaccacagaaggaggagcag
gagatgcgcatgcatgctaaggtgtccaaggtacgccacgaacgacgacacagtgatctt
gcaatcaatgaagttggactgggacctggtgaaggaggaggaggaggaggcagtgcaggt
gaggtgcctgaaaaccgtttggccaggaggggtggaggtggggagggagaccgcaaagcc
ctcctggagaaccaccgagcctactctgtggataggaccgtggggggtggaggggggcct
ccgactgctggaggtggattgcgatcagggcctcaacctggggtacaggcgcctccagac
tggggtccaaacaagggccgactagaacctggtacaacacggacaccaagagacaaaggt
ggggataacctgctgaggaaggactcccagagctcagaccagtcagagtctttgcggccg
ccccctccacggtcatacaagagcaagcgcggagtcaacaagaggcagatgtccatcagc
agctcagaggaggagggcggctccacgcccgagtacaccagctgtgaggacgtggacatg
gaaagcgtcagcgagaaaggtgactgggactgtcatcctctagatcccacagtgtggcat
catccagtcacatggcagccatctaaagaaggtgaccacttgatcggacgcatcacacta
agcaagcggtctgccatgccccgtgaggctggttccctccttggccttaaagtggtagga
gggaagatgacagagacaggaagacttggggccttcatcaccaaagtcaagaaaggcagt
ctggcagatgtcgtgggacacctacgagcaggtgacgaggtgctacagtggaatgggaag
tcgttgccaggagcaaccaagaaagaagtgtacaacattatccttgaatcaaaggctgaa
cctcaagtggaaatagttgtttcaagacctattggagacataccaagaatcccagagtcg
ccccaccctcctctagaatctagctcaagctcttttgagtcaccgaagatggaccgtccc
tctatatcagtgatgtcccctaccagtcctgggaccctcagagaccttcctctggtacta
cctggacagctctctgtgaagctgtggtatgacaaagtgggccatcagttgattgtcaac
gtccttcaagccatagacctgccaccaagaccagatggacgacctcggaacccctatgtc
aaaatgtacttcctgcctgataggagtgataagagtaaacggcggactaaaactgtgaag
aagagtgctgagcccaagtggaaccagacctttatatattcccacgttcaccggcgggac
ttcagagaacgcatgctagagatcactgtctgggaccagcccagggtgcaggaggaggag
agtgaattccttggcgagatcctgatagagttggagacggccttgctggatgacattcct
cactggtataaactccagacacatgacgtgtcctctatacctctgccccagccctctccg
tacctcccacgcagacatgtccacggtgacagccctagcaagaaactccagagtgcagag
cgtaactccagggagagagagcggggcagtacattagctgtgcctgagcagcagcggcct
gtccagcaccgctcccgctctgtgtctcctcacagagaggactcctgcagggcccggtca
cggcccgcacatgtgcccatgcaaaggagtctggatgagatccaccagaaccgccaccac
tcccactctccctcccgctaccacgactcccacttggagcaccaacgctccggtgactcg
gactatgagtactctgaggacagtgaggtcctggagatgcacaggtctatccggggcggg
agtgccgagtgcctgcacacaaacagctccaccctccctgcatgcctaaagagcaagccg
ccccacagacaagagggggttagcaccatgccacgtagcatccttacacaccgcgtgctc
aggttcactgatgaggtcacagttagcgacctgcagccatcgttggacagagtgaggagt
gccagcaccacttgtctgagaccagacaccaactttcactcccctgacagagacaggtgc
tccaactctttgccccgcaagactcccccaagtccaaggatcttagtagaacatgtggcc
cctgaggaagacaggcagtctaacaattcatcaagtccaaactgtaacaggggcagcaaa
aaaaacctggagggggacagtcgtatccaacccacctctatcctgaggggcagtaggggg
agagggggcccgctgaggccctttggccagacagccctggctgggtcctgcccaaactca
ccacggctagacagagcacaccctcatggcagcccctctcctccaacggggactccctca
tcaggtcgcaggggcaggcagctgccacagctccctgcaaagagcagcagcatagagcaa
gctcttgcagtagaggagcgagcccgactgcccagagcccagctgcagatgaaagtacat
tcctatcggccttcagcctcccacgaccctgagacggacctcaagaccaaacgggagatg
tacgcagaactgaggcgtagtagtgacaacatgtcggccagatcatcagacagtgatatg
agcgacgtgtcagccctctcccgagccagcagtgcctcccgcctcagcagcaccagctac
atgtctatccaatcagaacgacctgggggacgactcagtcggcagatgcggtcgtcgatg
ggccgcagcatgctgaagagctccagtgtgagtggagagatctacacccaggagcgcacc
gatggcagccaatcagacacagcgctgggcacggtgggtggcggcagcaagaaaagacgc
tccagcctcagcgcgcgggtggtggccatcgttggcaaccgtcgcagccgcagtacttca
cagatcagcggccccgaggggaaaagtaagaaggagaagggtgcacccatccagaggagc
acagagactggaatggcagtggagctgaccaggaacatgagccgtcagcccagcagagag
tccaacaatggcagcatgaacagctacaactctgagggaaatttgatcttctctggagta
aatgtgggtgctagcagtcagttcagtgacttcctggatggtttgggaccagctcagtta
gtgggcaggcaaacactggctactcctgccataggtgacatccagattggtatgatggag
aaaaagggtcagctggaggtggaagtcatcagagctcgaggactcgtacaaaagccagga
tccaaatctctccctgctccatatgtcaaggtctatctgctgaataatggagcgtacgta
gccaaaaagaaaaccaagattgcacggaaaacacttgatccattgtaccagcaagcactg
ctatttgaggaaagcccacagggtaaagtcttacaggtgattgtatggggagactacggc
cgtatggaccataaaagcttcatgggagttgcacaaatcctgttggaggaactggactta
tcaagcacagtcattggttggtacaagttgttcccaccatcctccttggtggatccgaca
cttgcctctctgacgcggcgagcttcccagtcatcacttgacagctcctccggacccccg
ggggtccgatcctag
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integrated database retrieval system
