Lates calcarifer (barramundi perch): 108884604
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Entry
108884604 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: transcriptional repressor CTCF
KO
K23195
transcriptional repressor CTCF
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108884604
03036 Chromosome and associated proteins [BR:
lcf03036
]
108884604
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
108884604
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
108884604
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
Zf-C2H2_ZNF451_C
zf-C2H2_7th_ZNF462
Zf-C2H2_ZNF451
zf-met
zf-C2HE
zf-C2H2_6
zf-C2H2_15
Teflon_C
zf-C2H2_ZN142
zf-C2H2_CASZ1
DUF8106
Motif
Other DBs
NCBI-GeneID:
108884604
NCBI-ProteinID:
XP_018534113
LinkDB
All DBs
Position
LG10:26884433..26897232
Genome browser
AA seq
844 aa
AA seq
DB search
MDGGPTEGVGVVEVPSKDFPSIQAVHSQDAMVADLLQQAAEAGGVVEGQAGVVLEQGHGE
GMVAATQAQQQLMEAGVGVGVEGGAGVEMMVMDSLDPTLLQMKTEVIDAAVGGSSAAVGV
VGGVAGAAHQATVTTVDQTQIITLQVVNMEEQAALGLGELQLVQVPVSATTVEALQQGTF
VDTTAMPKDGDPVICHTLPLPEGFQVVKVGANGEVETVEQEEEGGEAHPEEEEDEEVGNQ
LLEEGEDEPIQPPNDDPNWNKDPDYQPPSGAVKKTKKGKKSRLRYAEGDKDMDVSVYDFE
EEQQEGLLSEVNAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHT
DERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCTDCDMAFVTSGELVRHRRYKHTHEK
PFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYEC
YICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSFIETGKKC
RYCDAVFHERYALIQHQKSHKNEKRFKCDMCDYCCRQERHMVMHRRTHTGEKPYACSQCE
KTFRQKQLLDMHFKRYHDPNFVPTAFVCPKCSKTFTRRNTMARHAENCSGEAEDAENGAP
TPKRGRRGRKRKMRSRRDEDDSEEDHVEPDEEDEGEGEEESSLLQEEEEPESMELDQAPA
AIPVPAPDEPPVKRKRGRPPKNAPKPPASSKSVRVASKTAASAAAIIQVEDESTGAVENI
IVKKEEGDASAATPLEQGVALTVEGVGLDGEGVETVELAVNEETAAAAANGDLTPEMILS
MMDR
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atggacggagggccaacagagggtgtaggggtggtggaggtcccctccaaagacttcccc
tccatccaggccgttcacagccaggatgccatggttgctgacctcctccaacaagctgca
gaggccgggggcgtggtagagggacaagctggagttgtccttgaacaaggtcatggggaa
ggaatggtagcagccacccaggcccagcagcagctaatggaagctggggtcggggttggt
gtagaaggcggagcaggggttgaaatgatggttatggattcactggatcccaccctgttg
cagatgaagactgaggtgatagatgctgcagtggggggatcatcagccgcagtgggtgtt
gttggaggggtagctggtgccgctcaccaagcgactgtaacaacggtggaccagactcaa
atcatcacactgcaggtggtaaacatggaggaacaggcagctttgggcctgggagagctc
cagctcgtccaggtgcctgtttctgccaccacagtggaagccctgcagcaaggcactttt
gtagacaccactgcaatgccaaaggatggagacccagtcatctgccacaccctgccactg
ccagagggctttcaggtagtaaaggttggtgctaatggagaggtggagacagtggagcag
gaagaggagggaggagaagcccaccctgaagaggaggaagacgaggaggtggggaaccag
ctgttggaagaaggggaggatgagcctattcagcctccaaatgacgacccaaactggaat
aaagacccggactatcagcccccatctggagctgtcaagaagaccaaaaagggtaaaaag
agtcgtctgcgttatgctgaaggagataaagacatggatgtcagtgtctatgactttgaa
gaagagcagcaggagggccttctgtctgaggtcaatgctgagaaagtggtgggcaacatg
aaaccacccaaacccacaaagatcaagaagaaaggagtgaagaagacatttcagtgtgaa
ctgtgtagctacacctgcccccgacgctccaacctggacagacacatgaagagccacacc
gatgagagacctcacaaatgccacttgtgtggaagagccttcaggacagtcaccttgcta
agaaaccatctcaacacacacaccggaactcgtccacacaagtgcacagactgtgatatg
gcttttgtgactagtggagagctggttcgtcatcgtcgctacaaacacacacatgagaaa
cccttcaaatgctctatgtgtgactacgccagtgtggaggtgagcaaactaaagcgtcac
attcgttcccacactggtgagcgtccattccagtgcagtctctgcagctatgccagcagg
gacacatacaagctgaagaggcacatgaggacacactcaggagagaagccttatgagtgc
tacatctgccatgcccgatttacccagagtggaaccatgaagatgcacattctgcagaaa
cacacagagaatgtggccaagttccactgtccacactgtgacactgtcattgcacgcaag
agcgacttgggtgtccatcttcgcaagcagcactcgtttattgagactggaaagaagtgt
cgttactgcgatgcagttttccacgagcgctatgctctgatccagcatcagaagtcccat
aagaatgagaaaaggttcaaatgcgacatgtgtgactactgctgccgccaggagcgccac
atggtgatgcatcgtcgaacccacaccggagagaaaccatatgcatgcagtcagtgtgag
aagaccttcagacagaagcagctgctggacatgcacttcaagcgctaccacgaccccaac
tttgtccccactgccttcgtttgcccgaagtgtagcaagaccttcactcgcaggaacacc
atggcacgccatgctgagaactgcagcggtgaggcagaggatgctgagaacggagctcca
accccaaagagagggagaagaggaagaaaaaggaagatgagaagcaggcgggatgaggat
gacagcgaggaggatcacgttgaaccggatgaggaagacgagggggagggggaggaagaa
tcatcactgctacaggaagaggaggagccagaaagcatggaactggaccaggctcctgcc
gccatccctgtaccagcccccgacgaaccaccagtcaagaggaaacgaggccggcccccg
aagaatgcccccaagcctcctgcatccagcaagtcagtcagggtggcttccaagacagct
gcttctgctgctgccatcattcaggtggaggatgagagcaccggagcagtggagaacatc
atagtgaagaaagaggagggtgatgcctctgcagcaacacctctggagcagggagtggcc
ctgacagtggagggggtggggctagatggggaaggggtggagactgttgagctggctgtg
aatgaggaaacggcagccgccgctgccaacggagatctgactccagagatgatcctcagc
atgatggaccggtga
DBGET
integrated database retrieval system
