Lates calcarifer (barramundi perch): 108884656
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Entry
108884656 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: nestin
KO
K07609
nestin
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lcf04812
]
108884656
Cytoskeleton proteins [BR:
lcf04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type VI
108884656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
Motif
Other DBs
NCBI-GeneID:
108884656
NCBI-ProteinID:
XP_018534193
UniProt:
A0AAJ7LZ21
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Position
LG15:complement(2009196..2018461)
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AA seq
1315 aa
AA seq
DB search
MELHSVLKTVHHSHLGEEKHQMLNLNRRLETYLSRVKLLEEENVLLAQEIEALRRSNHGA
STRRKGLEEGVRQARLELDAAWRARFLTELEVGRLTEEFQALDLQRQREAQAHVKAKTML
QQSKKELEEEERAQIWLREKVSQLEHEMRHLIQTHQEDVAHLEATLTHSRATVPLTLAQR
GNQTPNLLQLDQEFSQRASRAWQEAAEAYQGQLAQVEESLNQARSRLTQVGQEKSESQLR
LQALEKEIASAQDVRLHLEKTAAQQRHKHSQEIQQLQAHLEGLEAEREELGQQIDHLLLE
NRGLLQMKMSLGLEVATYRALLDSESLRGDNSLLNQSRNISTKDAVFCPQGVKKNYQTPL
TASHKTTSLLSRRVITGTAPTVIHATACNNSYNSKPVTFNDTPKILKKPKDADTKSEAWE
TPYPKILQDGAVENFRPQEVHEKVTYAEPLSPPNEQEDFAQITSGDKEGEEECNSIHDKT
PKETPVVESFVSNQVGSGLSSEPSFNGDASHRQFTTSDLTPYDMRMTENVCVYSGESDKD
VTCEISVQKEDVQQPPALSDAGGNTECIGKAVEHVQGETSDSETDAVLEPTFESRTSSPA
SECEPGESVFNQLTDFSRDESCSNDDAVEIKQEISCSVLRTNETDVEDKLYPDGEEMDTW
DSVIERKVDLNADHGIKKDETEGQHAEPEEDISAREAEHEKREISFDVATDLQDDNVSTS
VMDTQVDDDEQHAALNQENDREDKEEEDDEEEDSQHVCVSWRTELESDSYAQDNTLADTR
PLIRYKSDETDANTQASHMEESESSEGEQEKKMGEPGSEMWNEGKSKRFGTMEDLCEEVE
GETLDKEYDLGYTHTEDRDVDHSMTVGENAASENAEEMIKNVSEGYSDEETEEFTKPMVP
TNVDYDEELETDRLVEQELENLSTDRYSAHFAQQQVSESEDMLQGESVEKMTEHEEAEKT
KSDDTSFCAESGVGVNNELESTTITDQPYENLYFSDSSVESQTDTLADEEVQHKDEDDTG
ASERREEEDEHNVSMVTHADVTGNCSGFSDFIITPDVVEVNDSEDPNAVLQENLQDDAAP
TEVKEVAPVEASKSQEHLVEDVEHQSFSDNPETAEWEVLENPSEDSEIRDQNEHDQKCDN
VPDSAEIYLHDDRGSDEVLTHKEEPLESSPDSVPDEKDIFLVKDSTELLNTHGKDNSLHS
VFSSGIKNDFWVSSLETGAAYQPDDVCNEAAEQTNQNLGFGDDLVWGNSDNPNVVNGNSR
VDTDLSKAVSSKKEQEQIHSEVKQVLCKDADEGELGHSEDSEVEVESWSSGEEAV
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atggagctccacagtgtacttaaaaccgtccaccacagccacctgggtgaggagaagcac
cagatgctgaacttgaaccgacgcctggagacctatctgagtcgggtcaaactcctggag
gaggaaaatgtgctgcttgcgcaggagattgaagctctgagacgcagcaatcatggagct
tcaacgcgcaggaagggcttggaggaaggggtgcggcaagcaagactggaactggatgca
gcctggagggccaggttcctcacagagctggaggttggcaggctgactgaagagtttcaa
gccctggaccttcagagacagagggaggctcaagcccacgtgaaggccaagacaatgctg
cagcaaagcaagaaggagctggaggaggaagagagggcgcagatctggctgagagagaag
gtcagtcagctggagcatgagatgaggcacctaattcaaacccatcaggaggatgtggcc
cacctggaggccacactgacccattccagagccacagtgccactcacattggctcaaaga
ggcaatcaaacaccaaaccttctacagctggatcaggagttctcccagagggcctccagg
gcatggcaagaggcagcagaggcttatcagggccagttagctcaggtagaggagtcgctt
aaccaggccaggagccgtttgacccaagtgggccaggagaagagcgaaagccagttgagg
ctccaagccctggaaaaggagatcgcctcagctcaggacgtcaggctgcatctggagaag
acggcagctcaacagagacacaaacacagccaggagatccagcaactccaggcacacttg
gaaggcctggaggcagagagagaggagctgggccagcagatcgatcatctcctcctggag
aaccggggcctgctgcagatgaagatgtctctgggcctggaggtcgcaacttacagagct
ttactggacagtgaaagcctcaggggagacaactctttgctaaatcagtcaagaaacatt
tccactaaagatgcagtgttctgtcctcagggggttaaaaagaattaccaaaccccactg
actgctagccacaagactacttcccttttatctcgccgtgttataacaggaacagcacca
acagtaattcatgcaacggcatgcaacaacagctataacagcaaacctgtaactttcaat
gacactccaaagattttaaagaaacccaaagatgcagacacaaagtcagaagcatgggaa
accccttatccaaaaatactgcaggatggtgctgttgaaaacttcagaccacaggaggtt
catgagaaagtcacctatgctgagcctctgtcacctcctaatgagcaagaggattttgct
caaatcacatcaggggacaaagaaggtgaagaggaatgcaacagcattcatgataaaact
cccaaggaaacaccagtggtggagtcatttgtcagtaatcaagttgggtctggcctgagc
agtgagccatccttcaatggtgacgcgagtcaccgccagtttacaacatccgaccttaca
ccatacgacatgagaatgacagagaatgtctgtgtctactctggtgaatctgataaggat
gtaacttgtgaaatttctgttcaaaaagaagatgtgcaacagccacctgctttaagtgat
gcagggggaaacacagagtgtataggcaaagcagtagagcatgtgcaaggggaaacctca
gattctgagactgacgcagtacttgaaccaacctttgaatccaggactagcagtccagca
tctgaatgtgagcctggagaaagtgtgtttaaccaattgacagatttcagccgagatgaa
agctgctcaaatgatgatgcagttgagataaaacaagaaataagctgttctgtgttaaga
acaaatgagacagatgttgaggataaattgtaccctgatggagaagagatggatacatgg
gatagtgtaatagagaggaaggttgatttgaatgcagaccatggaataaaaaaggatgaa
acagaaggacaacatgctgaaccagaggaagatatatcagcaagagaagcagagcatgaa
aagagagaaattagcttcgatgttgctacagatctacaagatgacaatgtgtccacttca
gtgatggacacacaagtagatgatgatgaacagcatgctgcattaaaccaagagaatgac
agagaagacaaagaagaagaagatgacgaagaggaggactctcaacatgtctgtgtgtca
tggaggacggagctggagagcgacagctacgctcaggataacactctggctgacactcgt
cctctgattcgatacaaaagtgacgagactgacgccaacactcaggcatcacacatggag
gaaagtgagtccagcgaaggcgagcaggaaaagaagatgggagaaccaggaagtgaaatg
tggaacgaaggcaagtcgaagagatttggaactatggaggatctgtgtgaagaagttgaa
ggggaaacgttggacaaggaatatgacctgggatatactcatactgaggacagggatgtt
gaccatagtatgactgtaggtgagaatgcagcatcagaaaatgcagaagaaatgatcaag
aatgtcagtgaggggtattcggatgaagaaactgaagaatttaccaaacccatggtaccc
acaaatgtagattacgatgaggagctagagacagacagactagtggagcaggagttagaa
aatctatctacagaccgctacagtgctcactttgctcaacagcaggtcagtgagagtgag
gacatgctgcagggcgagtctgtcgagaaaatgacagagcatgaagaggctgaaaaaaca
aagagcgatgacacgtctttctgtgcagagtctggagtgggggtaaacaacgaactggaa
tctactacaattacagatcagccttatgagaacctgtatttcagtgattcatcagtagag
tctcaaacagacactctggctgatgaggaggtccaacataaagatgaagatgatacaggt
gcttcagagagaagggaggaagaggacgaacacaatgtgtccatggtgacacatgccgat
gtgacaggaaattgctcaggttttagtgacttcatcatcacacctgatgtggtggaagtc
aacgactcagaggacccaaacgctgtgctacaggaaaacctgcaggatgacgctgccccc
actgaggtgaaagaggtcgcacctgtagaagcatccaagtctcaagagcatcttgttgag
gatgtagagcatcagtcattctctgataatccagaaacagctgagtgggaggtcctagag
aacccaagtgaggactctgaaatcagagatcagaatgaacatgatcaaaaatgtgataat
gtccctgactcagctgaaatttacctccatgatgacagaggctctgatgaggttctgaca
cataaagaggagcctctggagagctcccctgacagtgttcctgatgaaaaagatatcttt
ctggtgaaggattcaacagagcttctgaacacacatggcaaagacaacagcctccacagt
gttttcagctctggtataaagaatgacttctgggtgtcctccttggagactggtgccgcc
tatcaaccagatgatgtctgtaatgaagcagctgaacaaaccaatcaaaatctggggttt
ggtgacgacctagtttgggggaattcagacaaccctaatgtggttaatggaaactctaga
gttgacactgatttatctaaagccgtgtcttctaaaaaagagcaggaacagatccattct
gaggtgaagcaggtgttgtgtaaggatgctgatgagggagagttgggccattctgaggac
tctgaagttgaggttgaatcctggtcatctggggaggaagctgtataa
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