Lates calcarifer (barramundi perch): 108884695
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Entry
108884695 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: DENN domain-containing protein 4B
KO
K20163
DENN domain-containing protein 4
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108884695
Membrane trafficking [BR:
lcf04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
108884695
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
PPR_3
PPR_long
DUF2464
PPR
SPA
Motif
Other DBs
NCBI-GeneID:
108884695
NCBI-ProteinID:
XP_018534253
UniProt:
A0AAJ7LZA6
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All DBs
Position
LG15:complement(1113736..1143635)
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AA seq
1522 aa
AA seq
DB search
MTEEKCPQLVDYFVVAGLDPAGPWRPLDEDGKASITSSSSTSSSSSSSSSSSGRAVEPVT
DLAVIAKGLGEEVPEGFTCIERTLGGHSAELSAGLINNPHLFLCYRRGRDKPPILDLGVL
YEGKEQLKQGWYVIETTPYSRSASLSTGGAPTAHRVFLTYRRALDSQGLHTLGVTDIALL
LPSKGEVAPHTFCRVDKNLNTGMWGPALYVCYKRAVAKANALVYEASLISRYPEEDLEAF
PLPESVPVFCLPMGVTVESWPLNTKYQLPVFSTFVLTSASGDKVYGAAIQFYESFPRELL
SERQSVRLGLLSVVDRRPITNRSLQVKKSICVLSHWPFFTVFQKFLTFIYRYSISGPHVL
PLEKHISSFMHNVPFPSPQRPRILVQLSPYDNLLLCQPVSSPLPLSGASFLKLLQNLGPE
NACTLLLAVLTEHKLLLHSLRPDVLTSVSEALVSMSFPLRWICPYIPLCPLQMADVLLAP
MPFIVGVHSSYFDLYDPPTDVVCVDLDTNTIFQSEDKKPLSWRSLPRKHGKTLFNTLTNL
HKTLEKICTPGQEEATLEFLLTDYDQIYRRQKQLELEIQEVFLRFMSCLLRGYRTFLLPI
TQAPSDTTTDCSSLFNLQGFLKSRDRTQQKFYSQLTKTQMFTQFIEECSFVSDRHACLEF
FDECVQKVDVEKPEEVRLIDLDETHSGEHTVFIMPPEEPQEPDGSECPALYSYETFPTLK
PELFDQPQDQLRVPAKGSAPDSPAPRRTKQEIKLAQKRAQKYSAVPDMWSKCLLGHCYGL
WFIYLPTFVRAESAKVRALHTAYDVLKHMENRKVVLPDEVCYRILMQLCGQYGQPVLAVR
VLLEMKKAGITPNTITYGYYNKAVLESKWPSTNQGGRLRWAKLRNVLLAVAQFRQPIKRR
QKSGSVGSRGELMVDADQRPRPHSNLVRQSSWSGLSESSSHESLTGPLVKSNSLNSMKTS
SDKVKLGKKAVLRNTGTNGCGDAVSRKPPLGLRDTSTPPPAAPSAGGGVLVRRSQVCLST
FYKECAESADSEPDCSCQPAERDGRPAGVRDSAGRNKAVDENDNNVSSPSRGGLAGKLQQ
LLTPTRHRVSVRRAASVDDRRPGGGGGGVGRRVSEQRQSRKAQVAETLLKAKDRLVSATS
ESSLSVGSDLDLTDTPSPAYPLRRSWDANQEGAGLEVLMSSCSLCRSCNSLVYDEEIMAG
WTSDDSNLNSSCPFCCASFVPFLNAEICDLGPISSVERSNWNVEDEVESAVRPPSVHEAS
LRPQCNGLSEDSSSETSSYSENSRTTTGSSVGGAPQVTVAYLSPLVLRKELESLLENEGE
AVLAQPQFLDSHSIIFWNLVWYFQRLGLPSNLLQLVRASPLVSQFTQSESSAVRVRLLWD
TLTPDTDQWPPLYILWRIHSGVPMRSYSWRRHNHPFTLSFLEEVLRWVGMNEVHKAVTLF
LDTLAKQPGSPRIQRSLYREFLFLTLAAMGKDHVAAFDKKYKAAYSRLSSTLGREELRKK
RAQPPSPKAVDCRRSFHPPLEC
NT seq
4569 nt
NT seq
+upstream
nt +downstream
nt
atgacagaggagaaatgtccccagctggtggactactttgtagtggcaggtctcgaccct
gcagggccctggaggcccctggatgaggatggcaaggcctccatcacctcctcgtcctcg
acgtcctcctcctcctcgtcctcctcgtcctcttcgggccgggcggtggagcccgtgacg
gacctggcggtgatcgccaaggggctcggggaggaggtgccggagggcttcacctgcatc
gagaggacgctgggcggacactcggccgagttgagcgccggactcatcaacaacccgcac
ctgttcctgtgctaccgccggggacgggacaaaccgcccattctggacctgggggttctg
tacgaggggaaggagcagctgaagcagggctggtacgtcatcgagacgactccctacagc
cgctcggccagcctgagcactggcggcgctccgacggctcaccgggttttcctgacgtac
cgtcgggctctggactcgcagggtctccacacactgggcgtcaccgacatcgccctgctg
ctgcccagcaaaggggaggtcgccccgcacacgttctgtcgcgtcgacaagaacctcaac
actggcatgtggggtccagccctgtacgtgtgctacaaaagagctgtggccaaagccaac
gccctggtctacgaagccagtctgatcagccggtacccggaggaggacctggaggcgttt
cctctgcccgagtcggtgccagtcttctgtcttccgatgggcgtcaccgtggagagctgg
cccctgaacacaaagtaccagctgcccgtcttctccaccttcgtcctcacatccgcctcc
ggggacaaggtttacggagcagccatccagttctacgagtccttcccccgggagctgctg
tcggagcggcagagcgtccggctcggtctgctcagcgtggtcgaccggcggcccatcacc
aaccgcagcctgcaggtgaagaagagcatctgcgtcctctcccactggcccttcttcacc
gtcttccagaagttcctcaccttcatctacagatactccatctccggaccacatgtcctg
ccgctggaaaaacacatctccagcttcatgcacaacgtcccgtttccttcccctcagcga
cctcgcatcctcgttcagctctctccatacgacaacctgctgctctgccagccggtctcc
tctcctctccctctcagtggagcgagcttcctgaagctgctgcagaacctcgggccagaa
aacgcctgcacgctgctgctcgccgtcctcaccgaacacaagctgctgctgcactcgctc
cgacccgacgtcctcacctccgtcagcgaggccctcgtctcgatgagcttccccctgcgc
tggatctgtccctacatccctctgtgtccgctgcagatggccgacgtgctgctggcgccg
atgcccttcatcgtgggcgtccactccagctacttcgacctgtacgacccccccacggac
gtggtgtgcgtcgacctggacaccaacaccatcttccagtcagaggataagaagccgctg
tcgtggcgatcgctacccaggaaacacggcaagactctgttcaacaccctcaccaacctc
cacaagaccctggagaagatttgcactcccggccaggaggaggcgacgttagagttcctg
ctgaccgactacgatcagatctaccggcgtcagaaacagctggagctggagatccaggag
gtgtttctgcgcttcatgagctgcctgctgcgaggataccgaaccttcctgctgcccatc
acgcaggctccgtcggacaccaccaccgactgcagttccctgttcaacctgcagggtttc
ctgaagtctcgggatcggacgcagcagaagttttacagccagctgacgaagactcagatg
ttcactcagtttatcgaggagtgctccttcgtcagcgaccgtcacgcctgcctcgagttc
ttcgacgagtgcgtccagaaggtggacgtggagaagccggaggaggtgaggctgatcgat
ctggatgagactcacagtggagaacacacagtcttcatcatgcctcctgaggaaccacag
gaacctgacggctcagagtgtcccgccctctacagctatgagaccttccccaccctgaag
ccagagctcttcgaccagcctcaggaccagctccgtgtcccagctaaaggcagcgccccc
gacagccccgcccctcgacgcacaaaacaggagattaagttggcccagaagcgagctcag
aagtactcagcggtcccagacatgtggtccaaatgcctgctgggtcactgttacggcctc
tggttcatctacctgcccacgtttgtccgggcggaaagcgccaaggtccgcgccctgcac
acggcctacgacgtcctcaaacacatggagaaccgcaaggtggtgctgccagacgaggtg
tgttaccggatcctgatgcagctgtgcggtcagtacggtcagccggtcctcgccgtccga
gtcctgctggagatgaagaaggcgggaatcacacccaacaccatcacctatggatactac
aacaaggcagtgctggagagcaagtggccgtccaccaatcagggtggacgtctccgctgg
gccaagctgaggaacgtcctgttggccgtggcccagttcagacagccaatcaaacggcgt
cagaagagcggctcggtggggtcgcggggagagctgatggtggacgccgatcagaggcca
cgcccccactctaacctggttcgtcagtccagttggagcggtctgtctgaaagctccagt
cacgagtctctgaccggcccgctggtgaagagcaacagtctgaacagcatgaagacgtcc
agcgacaaggtcaaactcggtaagaaggccgtcctccgtaacaccgggaccaacggctgc
ggcgacgccgtctcccgtaaacccccgctgggactcagagacacctccaccccgcctcca
gctgctcccagtgctggtggcggcgttctggtccggcggagtcaggtctgcctctctacc
ttctacaaagagtgtgcagagtcggctgactcggagccggactgtagctgtcagcctgca
gagagagacggcagacctgcgggggttcgagactcggccggcaggaacaaagccgtagac
gagaacgacaacaacgtctcgtccccgagccgaggaggtctggcggggaagctccagcag
ctcctcaccccgaccaggcaccgagtgtcggtacgacgagcagccagcgtggacgaccgg
cggccgggaggaggaggaggaggggttggaagaagagtgtcggagcagagacagtcgagg
aaagctcaagtggctgaaaccctgctgaaagctaaggacaggctggtcagcgctacctca
gagagttcgttgtctgtaggaagtgacctggacctgacggacacgcccagcccggcgtat
cctctgcgcaggtcctgggacgccaaccaggagggggcggggctggaggtgttgatgtcc
agctgctctctgtgtcgcagctgtaactcgctggtttacgacgaggagatcatggccggc
tggacgtccgacgactccaacctcaactcgtcctgcccgttctgctgcgcctccttcgtc
cccttcctgaacgcagagatctgtgacctcggacccatcagcagtgtggagcgcagcaac
tggaatgtggaggacgaggtggagagtgcagtgaggccccccagtgttcacgaggcgtcg
ctgcgacctcagtgtaacggtctgagtgaggactccagctctgagaccagcagctactca
gagaacagcagaaccaccacgggttcgtcagtgggcggggctcctcaggtgacggtggcc
tacctgagccctctggttctgaggaaggagctggagagtctgctggagaacgagggcgag
gcggtgctggctcagcctcagttcctcgacagtcactccatcatcttctggaacctggtc
tggtacttccagcgcctcggcctccccagtaacctgctgcagctggtccgagcgtcgccg
ctggtcagccagttcacacagtcggagagctcggcggtgagggtgaggctcctctgggac
accctgacccccgacacagaccagtggccccccctctacatcctctggaggatccacagc
ggcgtcccgatgagaagctacagctggaggagacacaaccacccgttcaccctgtccttc
ctggaggaggtgctgcggtgggtcggcatgaacgaggtgcacaaagccgtcacgctcttc
ctggacacgctggccaaacagccgggatctcccagaatccagaggagcttgtacagagag
ttcctcttcctcactctggcagctatgggcaaagaccacgtcgctgcgttcgataagaag
tacaaggcggcgtactctcggctcagcagcactctgggtcgcgaggagctccggaagaag
cgagctcagcctcccagccccaaagccgtcgactgcagacgaagcttccacccgcctctc
gaatgctga
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integrated database retrieval system
