Lates calcarifer (barramundi perch): 108884763
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Entry
108884763 CDS
T04895
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
lcf
Lates calcarifer (barramundi perch)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
VWA_2
FN3_Tor_3rd
DUF4992
Motif
Other DBs
NCBI-GeneID:
108884763
NCBI-ProteinID:
XP_018534356
UniProt:
A0AAJ7LWZ6
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Position
LG6:complement(3483008..3516413)
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AA seq
1587 aa
AA seq
DB search
MAPHLLASSSSSSLWLMLCYLLSVLLLLSPGVHGQGRLKLTVLSEDRLQMKWKEADGPIQ
GYKVRVRPISEVPQPELMLTTTRGRATVAGLDSSQEYALQVLVLNGTTEKLLAKRRFTME
GLREEEMIRSGSREQRKKMLPGGSGSGDLDDATEALLGLPTILYPDPPTTTTTAATTTTE
PPATETPSQLPDEAPEKTARDKRKRKKEKERDRSKVENKEEQGTTQGKQAEDKPRKTPFS
TQPVTGTSPRKPFECDSDAAADIMLLVDGSWSIGRTNFRRVRDFLEGLVTPFHIGPSHIQ
IGLTQYSGDPRTEWHLNNFTTKDQLLEAVRNFRYKGGNTFTGQALLHVMEENMRAEAGAR
SDTPFFLVLLTDGKSQDDAIAAANRLKSAGVEIIAVGVKNADEAELRQVASEPVDLNVYN
VNDFPLLAKLVARLVHILCGRIEDRGIAKRMEPAPTADPALSYPSPTDLRFSELGSREVK
LHWTNPAKSVQQYRVVYHSAEGQRPQEVVLAGSESTVLLDGLSSQTLYHVSIFPVYEDSV
GLALRGTVTTLPLAMPANLVVTPSSYSTLRVRWDAAPGATQYMILYSALSHGEPDDAKEE
KFSADQTVVELAELLPATDYSVTLYALYDEDPSDPVTAVAATFPLPPPASVHFPMVTHST
LRVSWVPGAADVPGHRITYSTNHGSDVKQVEVTGLNSVLVQNLSSLSRYLVSVQSHYPQG
LSAAFTSNVTTLKVPSPSDLRVTNFSGSDITVRWEAAANDVVSYLIKWISLSGGDLRQLR
VNGESEGVILEGVKDDKEYQISLSALYGDGAQSEAVAIRYSTLSGGGPSSVSVSEETAVS
LVVTWVPPNAHVLQYRVSYTALTGAEAQDSTVLVTGGEKRVVLESLQPDTRYSILVTAEY
RNREGGSSSAQGKTASLRVSSVSVVRSDHSSICVSWRPVSAVDGYRIVIQSVKDKEIKEE
TVDESSSSHCFTDLEAETLYRISVHSLLGSAEGAAVSILHPTATAPARIPIHPRMYPIHN
EVCPEVTIRNSIVKGFDMMEAFGLTQRAHSSVEGVAAEPFVFNTLPTYTLYRDVQLTQSI
KFIHAAGFSPEHTISIAFRMLQDTPREPFALWQLTDIDFQPKMGVVLNPTTKHLVYFSLD
YRGEVQELTFDQPQVHKLFYGSFHKVHLSVSQVSVSLSVDCQHVGERPARPLGSLPTDGF
EMLGKLVKTRGPNSGSAPFQLQSFEIVCNTTWASEDTCCNLPGVRDEESCPAPAYTCSCS
SDIPGAPGSPGPIGKPGPRGEKGEKGEQGQKGEVGPPGKPGFEGGLGLLGSTGPRGMSVQ
GKMGPPGATGQKGDPGRPGAQGLPGPPGPKGEEGIPGPQGIRGIEGSIGAPGITGPRGFQ
GMPGYPGPIGDRGPSGPVGPTGLPGNKGERGEKGEPQSMAMIYQLVTQACEQLVHKEVLK
LDMFINEISRKPAPIADPVGPPGEPGIPGPKGPPGARGTQGNVGPRGRPGKAGYPGEQGQ
RGTPGQKGDAGTNVQGPTGVKGFAGPPGESKLGVTGSKGDDGKPGPPGIPGSPGQPGEIG
PPGVCDSSGGCHRAPQQTEDPYYGYQP
NT seq
4764 nt
NT seq
+upstream
nt +downstream
nt
atggctcctcacctcctcgcttcatcatcatcatcatctttgtggctaatgctgtgttac
ctgctcagtgtcctcctgctgctgtccccaggggtccatggccaaggtcgtcttaagctg
acagtcctgtctgaggacagactgcagatgaaatggaaggaggctgatggacccattcag
ggctacaaggtccgagtgagacccatctcagaggtcccacagccagagctgatgctgacc
accacacggggccgggctactgtggcaggactggactccagtcaggaatatgccctccaa
gtcctcgtgctcaatgggacaacagagaagcttctcgcaaagagaagattcacaatggag
ggtctgcgggaggaggaaatgatccgcagtggtagccgagagcagaggaagaagatgttg
ccaggcgggtcagggtcaggagacctggacgatgcaacagaggctctgctgggcctgcca
acaattctgtatccagacccccccaccaccaccaccactgctgctactactactacagag
cccccagctacagaaaccccctctcagctccctgatgaggccccagagaaaactgctaga
gataagaggaagaggaagaaagaaaaagagcgggatcggtctaaggtggagaacaaagag
gagcaggggacgacgcagggcaaacaggccgaggacaaaccgaggaagacacccttctct
acccagccagttacaggcacatctccaaggaaaccatttgagtgcgacagcgatgcagca
gcggacatcatgctgttggtggatggctcctggagcattggacgcaccaacttcagacgg
gtcagagacttcttggagggcctggtgacacccttccacatcgggccaagccacatacag
atcggtctgacccagtacagcggggatcctcgcacagagtggcacctcaacaacttcact
actaaggaccagctgctggaggcagtaaggaattttagatataagggaggaaacacattt
acaggccaggcgctgctccatgtcatggaggagaacatgagggctgaagcaggggcgagg
tcagacaccccatttttcctggtcttgttgactgatgggaaatctcaggatgacgccatt
gctgcagcaaaccggctgaagagtgccggtgtggagatcatcgccgtaggtgtaaagaac
gctgatgaagccgagttgagacaagtggcatcagagccagtagatctgaacgtctacaat
gtcaatgacttccctctgctcgccaaactggtggcacgactggtccacatcctgtgtggg
aggatagaggaccgtggcattgcaaaacgaatggagcctgcgcccacggcagacccagcc
ctctcctaccccagtcctactgatctgcgcttttctgaactgggctccagagaagtgaag
ctccactggaccaatcctgctaagtcagtccaacagtacagagtggtttaccacagcgca
gagggtcagagaccacaggaggttgtattggccggctcagagtccactgtgctgctggac
ggcctctcctctcagacactgtaccatgtgtccatcttccctgtgtatgaagacagtgtt
ggcctggcgctcagaggaactgtcactacattgcctctcgccatgcctgccaacctggtg
gtgactccttcctcttacagcacgctgagagtaaggtgggatgcagcgcccggtgcgaca
cagtacatgatcctgtattcagccctcagccatggagagcctgacgacgccaaagaggag
aaattcagtgcagaccagacagtggtggagctggcagagttactgccagcaacagactac
tctgtcaccctctatgctctctatgatgaggatcccagtgaccctgtcactgctgttgct
gccacattccctctcccacctcctgcaagcgttcattttccaatggtcacccacagtaca
ctgagggtgagctgggtacccggagccgcggacgtgcccggccacagaatcacctacagc
accaaccacggcagtgacgtcaagcaggtggaagtaacagggctgaactcagtgctggtg
cagaacctgtcctctctgtccagatacctggtgtcagtccagtctcactacccacaaggc
ctgtctgcagcattcaccagcaatgtcaccacactgaaggtgccttctccatcagacctc
agggtaactaatttctcaggcagtgatatcactgtgcgctgggaggctgcagctaatgat
gtggtgtcctacctcatcaagtggatctcccttagtggaggggacctgagacagttaagg
gtgaacggtgagagtgaaggagtgatcctggagggggtgaaggacgataaggaataccag
atctctctgtctgcgctttatggagatggagctcagagtgaagctgtggccatacgctat
agcaccttgtctggtggaggaccatccagcgtatcggtctctgaggagactgcagtcagc
ttggtggtcacctgggtgcctcccaacgctcatgtcctccagtatcgtgtgtcttacact
gcgctgactggagctgaagcccaggacagcactgtgttggttacaggtggtgaaaagcgg
gtggtgctagagtcattacagccagatacacgttacagcattctcgtcaccgccgagtat
cgcaacagagaaggaggcagcagttcagcccagggcaaaactgccagtctgcgggtgagc
agtgtgagtgtggttagatcagaccactccagcatctgtgtgtcttggagaccagtgtct
gctgttgatggatatcgtattgtcatccagtctgtcaaagacaaggaaataaaggaagaa
actgtcgatgagtccagcagcagtcactgtttcactgatctggaagcagagactctctat
cgcatcagtgtgcactcactccttggctcagcagagggcgccgctgtctccattctccat
ccaacagccacagctccagccagaattcccatccatccccgcatgtatcctatccacaat
gaagtgtgccctgaagtcaccatcagaaacagcatcgttaaggggtttgacatgatggaa
gcatttggtctgactcagagagctcactcgtccgtggaaggtgtggcagcagagcctttt
gtcttcaacaccctccccacctacaccctgtacagagacgttcaactgacgcagagcatc
aagtttatccacgctgcaggtttctctccagagcacaccatcagcatcgccttccgtatg
ttgcaggatacacccagggagcccttcgccctctggcagctcactgacattgacttccag
cccaagatgggagtggtgctcaaccctactacgaagcatctggtgtacttcagtctggac
tacaggggagaggtgcaggaactgacctttgaccagccacaggtccacaaactgttctat
ggcagctttcataaggttcacttgtctgtcagccaggtgagtgtgtccctatctgtggac
tgccagcatgttggtgagagacctgcccgacctctgggcagcctaccgactgatggtttt
gagatgctgggaaaactggtgaagaccagaggacccaatagtggatctgccccgttccag
ctgcagtcctttgagattgtctgtaacaccacgtgggcttctgaggacacctgctgtaac
ctgcctggagtgagagatgaggagagctgtcctgccccagcgtacacctgttcctgttcg
tctgacatccctggagctcctggttcccctgggccaatcggaaaaccaggtcctcgtggt
gagaaaggcgagaagggagaacaaggccaaaagggggaggtgggtcctccaggaaagcct
ggatttgagggaggccttggactcttaggcagcactggaccccgaggcatgtctgtccag
ggcaaaatgggtccaccaggtgcaacagggcaaaagggggatcctggacgaccgggagcc
cagggattaccaggacctccaggtccaaaaggggaagaggggatcccaggcccccagggc
ataagggggatcgaaggtagcattggtgcacctggtatcactggacccaggggtttccaa
ggaatgccaggatacccagggcccataggggacaggggcccctcaggacctgtgggacct
acgggtttgccaggtaataagggggaacgaggagagaagggggagcctcagtctatggcc
atgatctatcaactggtcacacaggcctgtgagcagctggtgcacaaggaggtgctgaaa
ctggacatgttcattaatgagataagtcgtaagccagctcctattgcggacccagtagga
cccccaggggaacctggtataccagggcccaagggcccaccaggtgccaggggtacccag
ggaaatgtcggcccacgggggagacctggcaaggctggatatccaggagaacaggggcag
agaggtacaccagggcagaaaggtgatgcagggaccaatgtccaggggcccacaggggtc
aaaggatttgcaggtccaccaggtgagtcaaagctgggagttactggttccaaaggagat
gatggtaagccaggacccccagggatccctggatctcctggacagccaggcgagattggt
ccaccgggtgtgtgcgacagcagtggaggctgccacagagctccccagcaaacagaagac
ccttattatggctaccagccgtga
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