Lates calcarifer (barramundi perch): 108884928
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Entry
108884928 CDS
T04895
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM63 isoform X1
KO
K10654
tripartite motif-containing protein 55
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108884928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108884928
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
108884928
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-B_box
zf-RING_2
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
zf-RING_6
MTCP1
Sina_RING
Prot_inhib_II
Zn_ribbon_FGT1_2
HIP1_clath_bdg
Motif
Other DBs
NCBI-GeneID:
108884928
NCBI-ProteinID:
XP_018534544
UniProt:
A0AAJ7LXA9
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Position
LG4:432520..437676
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AA seq
441 aa
AA seq
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MESLEKQLVCPICLEMFTKPVVILPCQHNLCRKCANDIFQASNPYLSTRSGSTVTSGGRF
RCPSCRHEVVLDRHGVYGLQRNLLVENIIDMYKQGTTSSKPSPEPKVEQPMCEEHEDEKI
NIYCVSCSVPTCSLCKVFGAHKDCEVAPLHNVFTKQKAELTDCVSMLVGNNERIQAIISQ
LEETCRAVNENGSRQKSKVCETFDHLFALLEEKKGEMTLRITCEQEEKLDYIRGLRKKYS
EHMENTAKLLETSIQTLDESEMAVFLQTAKPLLQKIVEGTNTSHLDKLQHGYENMDHFTA
NFDRQRRALTNVDFIKVDEDDDDDDEDEVEVRGSLAGSRVEPQVHAAPAAAAANQQPPLS
PVQPAGVQLSASPPQRPSDAPPPPSTSITKSPAPSPNTQAPPPLPLPTASPTPQVQTEQQ
NESEDKDGPKHVFSFSWLNQK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggagagtctggagaagcagctcgtctgtcccatctgtctggagatgttcaccaagccc
gtggtcatcctgccctgccaacacaacctctgccgcaagtgtgccaacgacatcttccag
gcgtccaatccctacctgtcgacgaggagcggctccacggtgacgtccggtggccgtttc
cgctgcccatcctgtcgccatgaggtggtcctggaccgacacggagtctacggcctgcag
aggaacctgctggtggagaacatcatcgacatgtacaaacagggcactaccagcagtaaa
ccgtccccagagccgaaggtggagcagccgatgtgtgaggagcatgaagacgagaagatc
aacatctactgtgtgagctgcagcgttcccacctgttctctgtgtaaggtgttcggagcg
cacaaggattgtgaggttgcaccgctacacaacgttttcaccaagcagaaggcagagttg
acagactgtgtgtccatgctcgttgggaacaatgagaggattcaggcgatcatcagtcag
ctggaggaaacctgcagagctgttaatgagaacggcagcagacagaagtcaaaggtgtgc
gagacattcgatcacctgttcgctctcctggaggagaagaaaggtgagatgactctgagg
atcacctgtgaacaggaagagaaactggactacatccgaggtctgaggaagaagtacagc
gagcacatggagaacacggccaagctgctggagacctcgatccagaccctggacgagtct
gagatggccgtgttcctgcagacggccaaacctctgctacagaagatcgtggagggcacc
aacacatctcacctggataaactccaacatggctatgagaacatggatcacttcacggct
aactttgatcgtcagaggcgagcgctaaccaacgttgacttcatcaaagttgatgaagac
gatgatgatgatgatgaagatgaggtggaggtcagagggtcgttggcaggaagtcgagtt
gagccacaggtgcacgctgcacctgcagcagccgcagccaatcagcagcctcctctgtca
cctgttcagcctgcaggtgttcagctctcagcctcgcccccccagagaccctcggacgct
ccacccccgccttcgacctccattacaaaaagccccgccccctcgccaaacacacaggcc
ccgccccctctacccctccctacggccagccccacccctcaggttcagactgagcagcag
aacgagtccgaggacaaagacggacccaaacacgttttctccttcagctggcttaaccag
aagtaa
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