Lates calcarifer (barramundi perch): 108884944
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Entry
108884944 CDS
T04895
Symbol
puf60a
Name
(RefSeq) poly(U)-binding-splicing factor PUF60a isoform X1
KO
K12838
poly(U)-binding-splicing factor PUF60
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108884944 (puf60a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108884944 (puf60a)
Spliceosome [BR:
lcf03041
]
Complex A
U2 snRNP components
U2 related factors
108884944 (puf60a)
Complex B
108884944 (puf60a)
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GFIT
Motif
Pfam:
RRM_1
RRM_7
Motif
Other DBs
NCBI-GeneID:
108884944
NCBI-ProteinID:
XP_018534588
UniProt:
A0A4W6CL06
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Position
LG4:complement(331273..338829)
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AA seq
520 aa
AA seq
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MAAAVSAQGGPALIMENGQSTTTKLGLPPLTPNQQEALQKAKKYAMEQSIKSVLVKQTLA
QPFPSLQIPSLTMGLGDALSPLQSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPF
GPIKSIDMSWDSVTMKHKGFAFVEYEMPEAAQLALEQMNSVVLGGRNIKVGRPSNIGQAQ
PIIDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGKIKSCMLTREPTTGRHKGYGFI
EYEKAQSAQDAVASMNLFDLGGQYLRVGKAVTPPMPLLTPTTPGGLPAAAAVAAAAATAK
ITAQEAVGASVLGALAGPALLSQQLGGLPQAVMAAQAPGVITGVTPARPGLPQVGLVNPV
LATPPTPVAPLGSEAKREEEERQQEAQQDGAMEPLSEQEHMSISGSSARHMVMRKLLRKQ
ESTVMVLRNMVGPDDIDDDLEGEVTEECGKFGQVKRVIIYQERQGEEDDADVIVKIFVEF
SEAAEMNRAIQALNHRWFGGRKVVAEVYDQERFENSDLSA
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcagtttctgcgcagggagggccggctctcatcatggagaatggacagagc
accaccaccaagctgggtctgccgccgctcacccccaaccagcaggaagcgctgcagaag
gcaaagaagtatgccatggagcagagcattaaaagtgtcctggtgaaacagactctggct
cagccgttccccagcctccagattccatctctgacaatggggttaggagacgctctgtcc
cctctgcagtcggtggcggctcagcgtcagagagctctagccattatgtgtcgggtctac
gtgggctccatctactacgagctgggggaggacaccatcagacaggccttcgctccgttt
ggaccaatcaaaagcatcgacatgtcctgggactctgtcaccatgaaacacaagggtttc
gccttcgtagagtacgagatgcccgaggcggcccagctggctctggagcagatgaactcc
gtcgtcttaggaggcagaaacatcaaggtcgggaggcccagtaacattggccaggctcag
ccgatcattgaccagctggcggaggaagctcgtgccttcaacaggatctacgtggcgtcg
gttcaccctgacctctctgacgatgacatcaagagcgtcttcgaggcctttggcaagatc
aagtcctgcatgttgacccgagagccaaccaccgggcgccacaaaggctacggcttcatc
gagtacgagaaggctcagtccgctcaggacgccgtcgcctccatgaacctgtttgacctg
gggggtcagtacctgcgggtggggaaggccgtgactccacccatgcccctactcacgccg
accacccccggaggactgcctgcagccgccgccgtggctgctgccgctgccactgccaag
atcactgctcaggaggccgtgggagcatcggtgctcggggctctggccggaccagcgctc
ctctctcagcagttgggaggacttcctcaagccgtcatggccgcccaggctccaggtgtc
atcacaggagtgaccccggctcgacctggcctgcctcaggtgggtctggtgaacccagtc
ctggccacgccccctacgccagtggcccctctgggctcggaggcgaagagggaggaggaa
gagcgtcagcaggaggcgcagcaggacggagccatggagccgctcagcgagcaggagcac
atgagcatcagcggcagcagcgcccgacacatggtgatgaggaagctgctccgcaagcaa
gagtccaccgtcatggttctgaggaacatggttggacccgatgacattgacgacgacctg
gagggcgaggtgacggaggagtgcgggaagttcgggcaggtgaagcgcgtcatcatctac
caggagcgtcagggtgaggaggacgatgctgacgtcatcgtcaagatctttgtggagttc
tcagaagcggccgagatgaaccgggccatccaggctctgaaccaccgctggttcggagga
cggaaggtggtggccgaggtttacgaccaggagcgcttcgagaacagcgacttgtcagcg
taa
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