Lates calcarifer (barramundi perch): 108884972
Help
Entry
108884972 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: cadherin-20-like
KO
K06807
cadherin 20, type 2
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108884972
Cell adhesion molecules [BR:
lcf04515
]
Cadherins
Major cadherins
108884972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
108884972
NCBI-ProteinID:
XP_018534646
UniProt:
A0AAJ7LYL0
LinkDB
All DBs
Position
LG24:18503487..18524642
Genome browser
AA seq
828 aa
AA seq
DB search
KQPERREPGNNCTREESLLKYYSALHNGDQLHLPAIASTLLPVALCILTLLPHGLVGKPT
EEDSSALLQRVKRGWVWNQFFVLEEYTGLEPLYIGKLHSDMDKGDGSIKYILTGEGAGST
FTIDDSTGDIHAIQRLDREVKAQYVLRAQARNRLTDRPLEPESEFIVKIQDINDNEPRFL
DGPYQATVPEMSKIGTSVIQLTATDADDPTYGNSARVVYSILEGQPYFSVDAKTGVVRVS
LADMDRETRENYTVVIQAKDMGGQLGGLAGTTTINITLGDVNDNPPMFDQRLYQMSVPES
APVGSVVGRIWAKDRDIGVNAEMKYSIIDGDGRDTFDISTDPTNLFGIITVKKPLNFENK
PSYTLKVEGANTHLDPAFRHRGPFKDVTIVHVSVEDVDEPPLFDLPAYYVELPEDAEIGT
LVKTVSARDPDAANNTVRYSIERSSDPDKYFYIEITSGSLMTVRSLDREEIGWHNITILA
MEMNNPTQISSVSVAVKVLDVNDNPPLLTHYLEAYVCENAKAGQLIQTVTAVDPDEPLGG
QHFYYSLAPEAANNPNFTLRDNQDNTAWILTRRGGWSQQDQTVFYLPIFISDGEQPVQTS
TSTLTIRVCSCDHEGNVMSCNAEAYSLPASLSRGALIAILACIFVLLVCIFSLQQXMILL
MLSLRTHRKKPYLCDEEENVHENIVRYDDEGGGEEDTEAFDIAAMWNPREAHHHLGKMRQ
DMLPEIESLSRYVPQACVMGGGGGDSNVHGYVLAKLLEADMDPCAPPYDSLQTYAYEGEG
SVAESLSSLQSGTSNTDHEYDYLNDWGPRFKKLAEMYGVLETNSPPMW
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
aagcagccagaaaggagggagccaggaaacaactgcactcgtgaggaaagtcttttgaaa
tactactctgcgcttcacaatggagaccaattgcatcttccagcaattgccagtaccttg
ctccccgtggccctctgcattttgaccctcctgcctcacggccttgtgggtaagcccaca
gaggaggacagctcagcgctgctccagagggtgaagcgaggctgggtgtggaaccagttc
tttgtcctggaggagtacaccggactggaaccactctatatcggaaagcttcactcagac
atggataaaggcgacggctccattaaatacatcctgacgggcgagggcgcgggctccacc
ttcaccatcgatgacagcacaggggacatccacgccatccagaggctggaccgggaggtc
aaggcccagtatgtcctccgcgcccaggcccgcaaccgcctgacggacaggcctctggag
ccagagtccgagttcatcgtcaagatccaggacatcaatgacaacgagccgaggttcctt
gacggaccctaccaggcgactgtaccagaaatgtccaaaataggaacatctgtgatccag
ctgaccgccacggatgcagacgaccccacatacggcaacagtgctcgtgtggtctacagc
atcctggagggccagccttacttctccgtggacgccaagaccggcgtggtccgtgtgtcc
ctggcagacatggaccgggagaccagggaaaattacacagtggtcattcaggctaaggac
atgggcggccagctgggggggctcgccgggaccaccaccatcaacattacgctcggtgac
gtcaacgacaacccgcccatgtttgaccagaggttgtaccaaatgagtgtccctgagtcg
gcgccggtgggttcagtggtgggtcgcatctgggcaaaggacagggacatcggggtcaac
gccgagatgaagtacagtatcattgacggggatggacgagacacctttgacataagcacc
gatcctactaacctatttggcatcatcacggtgaaaaagccactgaactttgagaacaaa
cccagttacaccctgaaggtggagggtgccaacactcacctggacccagccttccgccac
cgtgggcccttcaaggacgtcaccatcgtgcacgtgagtgtggaggacgtggacgagccg
ccgctgttcgacctgccggcgtactacgtcgagctgccagaggacgctgagatcgggacc
ctggtgaagacggtgtcggcgagggatccagatgctgccaacaacacagtgaggtattcc
atcgagaggtccagcgaccctgacaagtacttctacatcgagatcacttccgggtcgctg
atgacggtgcgttcactggaccgggaggagatcggctggcacaacatcaccatcctcgcc
atggagatgaataacccgacacagatctcaagtgtgtcggtggctgtgaaggtcctggat
gtgaacgataatcctcccctgctgacgcactatttggaggcttatgtgtgtgaaaacgcc
aaagctggacagctgatccagacagtgacagcggtggatccagacgagcctctgggtgga
caacacttctactacagcctggcgccagaggccgccaacaaccccaacttcaccctgaga
gacaaccaagacaacacggcgtggatcctgactcgccgcggaggctggtcgcagcaggac
cagactgtcttctacttgcccatcttcatctccgacggtgagcagccggtccagactagc
accagcacgctgaccatccgggtgtgcagctgcgaccacgagggcaacgtcatgtcgtgc
aacgccgaggcctacagcctgcccgccagcctcagcagaggggccctcatcgccatcctg
gcctgtatcttcgtcctgttggtttgtattttttctttacaacagtgaatgattctgctc
atgctctccctgcggactcatcgtaagaagccctatctgtgcgacgaggaggagaacgtt
cacgagaacattgtgcgctacgacgacgagggcggcggcgaggaggacacagaggccttc
gacatcgccgccatgtggaacccacgggaggctcaccaccacctgggcaagatgagacag
gacatgctgccagagatcgagagcctgtctcgctacgtcccccaagcctgcgtgatgggt
ggcggcggcggggacagcaacgtgcacggatacgtgctggcgaagctcctggaggccgac
atggacccgtgtgccccgccgtacgactccctgcagacctacgcctacgagggcgagggc
tcggtcgccgagtcgctcagctcactccagtcagggacctcgaacaccgaccacgagtac
gactatctcaacgactgggggcctcggttcaaaaaactcgccgagatgtacggcgtgctg
gagacaaacagtcctccgatgtggtag
DBGET
integrated database retrieval system
