Lates calcarifer (barramundi perch): 108885095
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Entry
108885095 CDS
T04895
Name
(RefSeq) patched domain-containing protein 1
KO
K24682
patched domain-containing protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
108885095
Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
Other domain-containing proteins
Patched domain-containing proteins
108885095
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sterol-sensing
Patched
Motif
Other DBs
NCBI-GeneID:
108885095
NCBI-ProteinID:
XP_018534800
UniProt:
A0A4W6BJR2
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All DBs
Position
LG24:16939275..16950868
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AA seq
986 aa
AA seq
DB search
MLGSAPGLSGRWERLEPRPRARMLRQVLHAGLRTSFHALGRFVASHPVFFASAPVLLSIL
LGASFSRYRVEEDVESLLAPKHSLAKIEGNLVDSLFPVNRSKHALYSDLQTPGRYGRVIV
TTRKGSVLDPVHLDTILKLHRRIYQMQVTVPATGFNSFNYSFSYLCLPDDKNVCIIDDII
RAMEEIQSARTSNRSVPVLRYPITQLADGRQAYIGHQLGGVQGWGPSGAVRGPGTGARGE
GVRSARALQLTYYLQARGSLMDRVASQWEKAFCTELQHFAALHPKLGLYPSTSSSLRTDF
QFSSVLARRPLLASLGVCGVLAILCCSMRDCVRSKPWLGLLALLSITLSGLTAAGILNLT
GATYNSTYLGIPFVMLGHGLFGSFEMLSSWRRTREDQHVKERVASVFEDVMLRFSGSTML
HLMTLGLAASPLTNMEAVRLFCRTAALAVTISYVYMLSFYSSCLVFTGYLETGYRHGCFC
RRVPKPDRLDSKPAWYRCLMYTRYQDETQTTNPPHGVGHPHPPNPNLTHTHTHPHPHPHP
HTANNPNSHGHGHVTNSTHTHPHPHTHSTASTDLHPQDSHLLLGCVRRCYGDWITNTYVK
PFVVLLYLVYISFGLMGFLQVTQGSDPSALVAMDTTTVLYTRAQQRYFSSYSPVIGFYIY
ESAPYWNATVQRDLLEYAKGFQRISWLEAYLNYLSDRNQSTSQPRENFTRTLRHSFLREP
QFAHFADDIIFAERGQGEEPDVAASRIFLVAKTTENKREEMSVLLDTLRRLSLTSRVRFL
IFNPSFVYLDRYAAAVSSPLRHSLLAVLFLLGLSSLAVVEPLVSVWLGLTLLSVQFGVLG
FMTLWGVELDCMSVLCLISALGHSADCSGPLLCGFASGRGESRTRWVRVALERHGVPSLQ
TLICYSAALVPVGSVRSNLTRTLFRCLTLTAGCSALHTLAFLPTLLTFLPPSKSRGHRPG
GEGQRQEVECVEMNDSTRVVDQITTV
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgctcggcagtgctccggggctttccggtcggtgggagaggctcgagccgcggccgcgc
gctaggatgctgcgccaggtgttgcacgcgggcctaaggacctccttccacgcgctgggc
cggttcgtggcgagccacccggtgttcttcgcctcggcgcccgtgctcctctctatcctg
ctcggggccagcttcagccggtaccgcgtggaggaggacgtagagagcctcctcgcgccc
aagcacagcctggcaaagatagagggcaacctggtggacagcctgttcccggtgaaccgc
tccaagcacgccctctactccgacctgcagacgcccggccgatacgggcgcgtgatcgtc
accacccgaaagggtagcgtgctggacccggttcacctggacaccatactaaagctccac
aggcgcatttaccagatgcaggtgacggtcccagccactggcttcaacagcttcaactac
tccttctcttacctctgcctacccgatgacaagaacgtctgcattatagatgacatcatt
cgtgccatggaggagatccagtcagctcgcacctccaaccgctccgtcccagtcctgcgg
tacccaatcacacagctggcagatgggcgacaggcatacattggacaccagctgggcggg
gtgcaggggtggggtcccagtggggcagtgcgaggtccagggactggagccagaggagaa
ggcgtacgctctgcccgggcattgcagctcacctactacctccaagcccgaggcagcctg
atggaccgggtggccagccagtgggaaaaggccttctgcacagagctacagcactttgca
gcactgcacccgaagctggggctctacccttccacttcctcttccctgaggacagacttc
cagttttcttcagtgctggcacgtcgccccctgttagccagcttgggggtgtgcggtgtg
ctggccatcctttgctgctctatgagggactgtgtgaggtctaaaccctggttgggactg
ctggctttgctgtcaatcacactgtcaggcctcactgctgctggaatactcaacctgacc
ggggccacctacaactctacatacctgggcatccctttcgtcatgcttggccatggactc
tttggctccttcgagatgctgtcgtcatggaggcgaacccgggaggaccagcacgtgaag
gagcgtgtggcgagtgtctttgaggatgtcatgctgcgtttctctggctccaccatgctc
cacttgatgaccctgggcctggctgcttcaccacttacaaacatggaggccgtccgtctc
ttctgccgcaccgccgccttagccgtcaccatcagctatgtttacatgttgtccttctac
agttcctgtctggtgtttacaggatacttagagactggatatagacacggctgcttctgc
cggagagtccccaaaccggaccgactggactctaaaccggcctggtacaggtgtttgatg
tacacccgctaccaagatgagactcagaccaccaacccgccacatggagtcggacaccct
cacccaccaaatcctaacctaactcacacacacacgcacccgcacccgcacccgcacccg
catactgcaaacaaccctaattcacatggacacggtcatgtgactaactccacacacaca
catccgcaccctcacacacactccacggccagcacggaccttcatcctcaggactctcac
ctattgctggggtgtgtgaggcgttgctatggagactggatcactaacacttacgtcaaa
ccctttgtggttctgctgtacctggtttacatctcctttggactgatgggcttcctacag
gtgacccagggttctgaccccagtgcccttgttgccatggatacaacaactgtattgtat
acccgtgcccagcagcgatacttcagctcatactcccctgtcattggattttatatctat
gaaagcgccccttactggaatgccacagtgcagcgggacctgctagaatacgccaaaggc
ttccagagaatcagctggctggaggcctatctgaactacctgtcagaccgcaaccagtcc
accagccagccacgggaaaacttcacccgcacgctccgccactccttcctgcgtgagcca
cagtttgcccacttcgcagacgacatcatatttgcagagcgcggtcagggtgaggagccc
gacgtggctgcatcacggatcttcctggtggccaagacgacggagaacaaacgcgaggag
atgtcagtgctgttggacacgctgcgacgcctgtcactgacctcacgtgttcgcttccta
atcttcaacccctccttcgtctacctggaccgctacgctgcggcagtgagctccccactc
agacactcactgctggcggtgctcttcctgttgggtctgtcgtccctggccgtcgtggag
ccgctggtctctgtgtggctcggcctcaccctgctctcagtgcagtttggagtactgggc
ttcatgaccttatggggtgttgagctggactgcatgtctgtgttgtgtctaatttcagct
ctgggacactcggcggactgcagcggccccctcctctgtggctttgcctcgggtcggggt
gaaagcaggactcgctgggtgagagtggcgctggagagacatggagttccctctctacag
acgctcatctgctacagcgccgcactggtgcctgttggctctgtacgctccaacctcaca
cgcacactgttccgctgcctcaccctcacagccggctgctcggccctgcacacactggcg
ttcttgcccaccctcctcactttcttgcccccctccaagagccggggccaccgccctgga
ggagagggtcagagacaggaggtggagtgtgttgaaatgaatgacagcacccgagtggtc
gaccagatcaccaccgtctga
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