Lates calcarifer (barramundi perch): 108885111
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Entry
108885111 CDS
T04895
Symbol
tmtopsb
Name
(RefSeq) teleost multiple tissue opsin b
KO
K04256
c-opsin
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcf01009
]
108885111 (tmtopsb)
09183 Protein families: signaling and cellular processes
04030 G protein-coupled receptors [BR:
lcf04030
]
108885111 (tmtopsb)
Protein phosphatases and associated proteins [BR:
lcf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108885111 (tmtopsb)
G protein-coupled receptors [BR:
lcf04030
]
Rhodopsin family
Vision
Opsin
108885111 (tmtopsb)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
7tm_1
7TM_GPCR_Srx
7TM_GPCR_Srsx
7TM_GPCR_Srv
7TM_GPCR_Srw
DUF2975
DUF2189
Motif
Other DBs
NCBI-GeneID:
108885111
NCBI-ProteinID:
XP_018534825
UniProt:
A0A4W6BPZ5
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Position
LG24:complement(16677233..16700705)
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AA seq
416 aa
AA seq
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MIVSNVSLSCAHCSGGGVGDSAATAVTDAYGEVSGALPPLSLSPTGHLVVAVCLGFIGTF
GFLSNFLVLTLFCRYRVLRTPMNLLLVSISASDLLVSVLGTPFSFAASTQGRWLIGRAGC
VWYGFVNACLGIVSLISLAVLSYERYCTMMSPTMADGRDYRPALGGICFSWLYSVAWTVP
PLLGWSKYGPEGPGTTCSVDWKTQTPNNISYIICLFTFCLVLPFGVILYSYGKLLHAIRQ
VRSVSSVVTRRREQRVLVMVITMVVCYLVCWLPYGAAALLATFGPPDLLTPEASITPSLL
AKFSTVINPFIYIFMNKQFYRCFRAFLSCSVPERGSTLKTFSRATKTLRTIRQEKEHHVS
DPAPSTALPTPNSIHGSSQGASHMTPPLSNPDSAAPHSPATNSPKPKLILVAHYRE
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtttccaacgtgagcctaagctgtgcgcactgttccgggggaggagtcggcgac
tcggcggcgactgcggtgacagacgcgtacggagaggtgtccggcgctctccctcctctg
tccctgagcccgacggggcacctggtggtggcggtgtgcctcggcttcatcggcaccttc
ggtttcctcagtaacttcctggtgctcacgctgttctgccggtaccgggttttgcgcacg
cccatgaaccttctgctggtgagcatctcagcgagcgacctgctcgtcagcgtgctgggt
accccgttcagcttcgcggccagcacccaggggcggtggctgatcggacgcgctggttgc
gtctggtacgggttcgtaaacgcatgtttgggcatcgtctctctgatatccctggccgtt
ctgtcgtatgagcgctactgcaccatgatgtcgcccactatggccgacggcagggactac
cgcccggcactgggagggatctgcttctcctggctctactctgtggcctggactgttccc
ccactgctgggctggagcaagtatggacccgagggtcccggcaccacctgctcggttgac
tggaagacccagacgccaaacaatatctcctacatcatctgcctgtttaccttctgcctg
gtcctgccattcggcgtcatcctctactcctacggcaagcttctgcacgccatcagacag
gtccgcagtgtgagttcagtggtaactcgtcgcagagagcagcgggtgctggtgatggtc
atcaccatggtggtgtgctacctggtctgctggctgccgtacggggctgcggctctgctc
gcgacctttgggccccctgaccttttaactccagaggcaagcatcacgccatcactgctg
gccaagttctccaccgtcatcaaccctttcatctatatattcatgaacaaacagttctac
aggtgtttcagagcattcctcagctgctctgtccccgagcgaggctccaccttaaagacg
ttttcacgggcgaccaagacactccgcaccatccgccaggagaaggaacaccacgtgtcc
gatccagccccctccacagccctgcccacgcccaactccatacatgggtcctcccaggga
gccagtcacatgactccacctctgtccaatccagattctgccgctccccactcccctgcc
accaacagccccaaacctaaactgattctggtggctcactacagggaataa
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