Lates calcarifer (barramundi perch): 108885126
Help
Entry
108885126 CDS
T04895
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 1-like
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108885126
Membrane trafficking [BR:
lcf04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
108885126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_2
TPR_7
TPR_1
TPR_8
SH3_1
TPR_10
TPR_NPHP3
SH3_9
RMMBL
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
108885126
NCBI-ProteinID:
XP_018534831
UniProt:
A0AAJ7PP48
LinkDB
All DBs
Position
Unknown
AA seq
1300 aa
AA seq
DB search
MDAASLKGTLSTHEENFPTALPVMLDVVRGPDRLPADEEIKEMLRGKLRILQVDSSKVNA
LFKELSAHIISINSEDKVIFVRFKTFEEIWKFTTYYTIGFLGQCMENLLLDQKFWLSSLG
DDIAIDVSIQEETLDLIYKGILMQEGSLFATCSANQMFDSSTSGGDLYLEQGDIAQFEPP
FLGSGWSVLCLADGARGTAPKPALEPVIPFHQWFFKSCAENMLVGGGKPACDFPLQFARG
TCLATAEYDAEGPDELSMAPGDRIIIVGILVSCFDWFTGRKEVTGEVGLVKTSLVTPFTD
IYSSTDIFLEEEEGMFFSLKEDKVIEETTALLKKKSQNDTGQNYKLDIISYQDFEKKPSL
SSSGKVDPQQIDLKRNIQRILDQGKDSSTDSIVTMSGSLEDLEVLPTEAKDSSPPCFTVH
PIVEGNNNTENFTHLFSFLEGKDCKEEFGFLYRLNSECLTSTTFSGHSDENELMAFLSVA
RETAKKKRLLWSQTRLCFLLGKLCAGRSKFSQARVYFEEALSVPQEGFSDLKLLTSIYSN
LAAIYILQKNAESFFAVTERLVAFLLGIPDCLGSLEDSSVLKYILKKAVLSHNKMAEARA
CYLLAKHHCTCADGAQAVPYLERLLVLCAEAQGTWSMSLSHGYLTLGRVYSDLCRPNLSV
SSARKASLQPSAKLRDCLNSMVLALDNVNKLNGITEQEASIPSQVAPFLHRALSFTNVQE
GGRNRYHVLHHQLTVCLCQLFYKHKMVEHAIHHMHILISNSPPLQAIPISVPERNSTFTW
LAWLHIDNNQPNVALDILDLVLSSMPEHCTTPQEGVVLNMHGVALRCMGNLQRAAESYQA
AIDICQEYEDLPNLAVAQANLGLLCLKAGAKGLAQRHLTEAVQLFSELDEEGHEANFITV
LLKLGQHYVKQQQLYYGKGCYEWALLLAINANLLDCQLTATRNLCHLYGCESPDQEQCII
YSQHQVQLLRQSGDRGQEGDALEAISQLYLTLGTERAYRAALDYTKSSLGIYIDLGFREK
EAYGWLQAGKIYHLLGQTELVDLYVQVAQDVALSTGDTKFILKLLEAAGDIFLNSCQDRD
KAVTFYRDRALPIAVKSSSVHTRLRLCNKLTEVMLSLKLYGEAVEFAQTALDISITQGER
LNERVAYHRLACLYRCLEQYELAEHYYLKTLTLCPTPLQFEEETLYYVRVYQTLGDMIFY
DLKDPFDAAGYYHLALAAAMDLGNKRSQLQLCTRLATIYHNFLIDRELSLFFYQRARGFA
AELNVRRINISPDQHYSSISQYTATGKYSFTQKTNFLQDV
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atggatgctgcaagtctgaagggaactctatctacacatgaggaaaacttcccaacagct
ctgccagtgatgctggatgtggtcaggggtcctgatcgtcttcctgctgatgaggagata
aaggaaatgttaagagggaaactccgcattttgcaggttgacagcagcaaggtcaatgct
ctattcaaggaattgtctgctcatatcatctccatcaacagtgaagacaaagttattttt
gtaagattcaaaacatttgaggagatatggaagttcaccacatattatacaataggtttc
ctaggtcagtgtatggagaatttgttgcttgaccagaagttctggctcagttctttggga
gacgatattgctattgacgtttccattcaggaggaaactcttgaccttatctacaaaggc
atcctcatgcaagagggttcattgtttgctacttgtagtgccaaccagatgtttgacagc
tccacatctggaggagacctgtacctggagcagggagacatagcccagtttgagcctccc
tttcttggctctggttggtctgtcctctgcttagccgatggagcccggggcactgcaccc
aaacctgctctggagccagttattcctttccatcaatggttttttaagtcctgtgctgag
aacatgttagtcggtggtgggaaacctgcctgtgacttccctctgcagtttgccagagga
acctgcctggccacagcggagtatgatgctgagggcccagatgagctgagcatggcacca
ggtgatcgcatcatcattgtgggaattctggtgtcttgttttgactggttcacagggagg
aaggaggtaacaggagaagtgggtctggtcaagactagccttgtgacacctttcactgac
atttacagctcaacagatattttcttggaggaagaggaagggatgttcttcagtctgaaa
gaggacaaagtcatagaggaaacaactgccctattgaagaagaaatctcaaaatgatact
ggtcagaactataaactggatattatcagttaccaagactttgaaaagaaaccatcactc
agctcttcaggcaaagttgatcctcagcagattgatctgaagagaaatattcagaggatt
cttgaccaaggaaaagactcctcaacagattccattgtgaccatgagtggatctttggag
gacttggaggtcctgcctacagaggcaaaggactcaagtcccccatgcttcactgttcac
ccaattgtagagggaaacaacaacactgagaacttcactcacctcttctcttttttggag
ggaaaggactgtaaagaagagtttggtttcctgtataggctgaattctgaatgcctcacc
tccactaccttctctgggcactctgatgagaatgagctgatggcctttctgagtgttgcg
agggaaacagcgaagaagaagcgactcctctggtcacagactcgtttgtgcttcctgttg
ggtaagctctgtgctgggaggtctaagttcagccaggctcgggtttactttgaggaggcc
ctgagtgttccacaagaaggcttcagtgatctcaagttgttgaccagcatctactccaac
ctggctgctatatatattttgcagaaaaatgctgaaagtttctttgctgtaacagagcga
cttgttgcgtttctgttgggaatcccagactgccttggaagcttagaggacagctctgtt
cttaaatacatcctcaagaaagctgttctctctcataacaaaatggcagaagcccgggct
tgttatctactggcaaagcaccactgcacttgtgctgacggggctcaagctgttccatac
cttgagagactacttgttctttgtgctgaagctcaaggaacatggagcatgtctctcagt
catggatacctgaccctgggaagggtctacagtgacctctgccgtcccaacctcagtgtc
agttcagccaggaaagcttctctgcagccatctgccaaactgagagactgtcttaacagc
atggttctagctctggacaatgtcaataaactgaatgggatcactgagcaggaggcctcc
attccatctcaggtggctccatttttacatcgagccctctcttttaccaatgttcaagaa
ggaggaaggaaccgataccatgttttgcaccatcagcttactgtttgtctctgccaactc
ttttacaagcacaaaatggttgaacatgctatccaccatatgcatattctcatcagcaac
agtccacctctacaggcaatccccatctctgtgccagaaagaaacagtaccttcacctgg
ctggcatggcttcacattgacaacaaccagcccaatgttgctttggatatactggacttg
gttctatcttccatgccagaacactgcacaacccctcaggaaggtgtggtcctcaacatg
catggtgtggcacttcgatgtatgggcaatcttcagagagcagcagagagctaccaggct
gccattgacatctgccaagagtatgaggacctgccaaacttggctgtagctcaggctaac
ctagggctgttgtgtctgaaggctggagctaaaggactagcgcagaggcacctgactgag
gctgtgcagctcttctcagagctggatgaagaaggtcatgaggcaaactttatcactgtg
ctcctcaagctggggcagcactatgtgaagcagcagcagctgtactatggaaaaggatgc
tatgaatgggctttattgctggctatcaatgccaacctgttagactgtcagctcactgcg
accagaaacctgtgccatctgtatggttgtgagagtccagaccaggaacagtgtatcatc
tatagccagcaccaggtccagctgctgagacaatcaggagacagaggtcaggagggagat
gcactggaggctataagccagctctacctcactctgggcacagaaagggcgtaccgggca
gctctcgactacaccaagagcagtctgggtatttacattgacctgggcttcagggagaag
gaggcatatggctggctacaggctgggaagatctaccacctgctgggccagactgaactg
gttgatctttatgttcaggtagctcaggatgtcgctctgagcacaggagacaccaagttc
atcctgaagcttctggaggctgcaggagacattttcctcaacagttgccaggacagagac
aaggctgtcaccttctacagggaccgagctctgcccatcgcagtgaagagcagcagtgtt
cataccaggctgagattgtgcaataagctgactgaagtgatgctcagtctcaagctgtat
ggggaagctgttgagtttgctcagactgcactggacatcagtatcactcagggtgaacgt
ctgaatgagcgagtggcctaccaccgcctggcctgtctataccgctgtctggagcagtat
gaacttgctgagcactattacctgaagactctgaccctctgtccgacacctctgcagttt
gaggaggaaacactgtactatgtcagggtctaccagacactaggggacatgatattctat
gacctgaaggacccgtttgatgctgcaggttactaccacttggctctggctgcagccatg
gatctaggcaacaagagatctcagctgcagctctgcacacgtctcgccaccatctaccac
aacttcctcatagaccgggagctgtctctgttcttttaccagagggcaagaggatttgct
gcagagctgaatgtgagaaggattaacatctcaccagatcaacattatagcagcatctca
cagtacacggccactggaaaatattcttttacacaaaaaactaactttctgcaagatgtg
tga
DBGET
integrated database retrieval system
