Lates calcarifer (barramundi perch): 108885158
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Entry
108885158 CDS
T04895
Name
(RefSeq) thyroid hormone receptor alpha-B
KO
K05547
thyroid hormone receptor alpha
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04080
Neuroactive ligand-receptor interaction
lcf04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
108885158
04081 Hormone signaling
108885158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108885158
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
lcf03310
]
108885158
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
108885158
Nuclear receptors [BR:
lcf03310
]
1. Thyroid hormone like
1A. Thyroid hormone receptor (THR)
108885158
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
108885158
NCBI-ProteinID:
XP_050922154
UniProt:
A0A4W6G9H3
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Position
LG23:complement(15090041..15293915)
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AA seq
409 aa
AA seq
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MEHMPKEQDPNPSEGEEKRWLNGPKRKRKNSTCSMKSVSGYIPSYLEKDEPCVVCGDKAT
GYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYDGCCIIDKITRNQCQLCRFKKCIAVGMA
MDLVLDDSKRVAKRRLIEENRERRKKEEMVKTLQTRPEPTGAEWELIRLVTEAHRHTNAQ
GAQWKQKRKFLPDKIGQSPVAPTSDGDKVDLEAFSEFTKIITPAITRVVDFAKKLPMFSE
LPCEDQIILLKGCCMEIMSLRAAIRYDPESETLTLSGEMAVKREQLKNGGLGVVSDAIFD
LGKSLAQFNLDDTEVALLQAVLLMSSDRSGLTCMDKIEKCQETYLLAFEHYINYRKHNIP
HFWPKLLMKVTDLRMIGACHASRFLHMKVECPNELFPPLFLEVFEDQEV
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggaacacatgcccaaggagcaggaccctaacccatcagagggagaagagaaacggtgg
ctcaatggcccgaaaaggaagaggaagaacagcacatgttcgatgaagagtgtgtctggg
tacatccccagttacctcgaaaaggatgagccatgtgtggtgtgtggcgacaaggccacg
ggttaccactaccgctgcattacatgcgagggctgcaagggtttcttccgtaggaccatt
caaaagaacctccaccccacctactcctgtaagtacgatggctgctgcatcatcgacaag
atcacccgcaatcagtgtcagctctgccgcttcaagaagtgtattgcagtgggcatggcc
atggacttggtgctggatgactcaaagcgggtggccaaacggcggctcattgaggagaac
agggagcgacgcaagaaggaggaaatggtgaaaaccctccagacccgtccagagcccacc
ggggccgagtgggagctgatccgcctggtgacggaggcccatcgtcacaccaatgctcag
ggcgcacagtggaaacagaagcgcaaattcctgccagacaaaatcggccagtccccggtt
gcccccacgtcagacggagacaaggtggacctggaggctttcagcgagttcaccaagatc
atcactcctgccatcacccgtgttgtggactttgccaaaaaactgcccatgttctctgag
ctgccttgtgaagaccagatcatcctgttgaagggctgctgcatggagatcatgtcactg
cgagctgccattcgctatgacccagagagtgagacgctgacactgagtggggagatggct
gtgaagcgtgagcagctgaagaatggcgggttgggtgtggtgtcagacgccatcttcgat
ctgggcaagagcctggcacagttcaacctggacgacacggaggtggcgctgttgcaggcc
gtgctgctcatgagctcagaccgctctggcctgacctgcatggacaagatcgagaagtgc
caggagacctacctgctggcatttgagcactacatcaactaccgcaagcacaacattccc
cacttctggccgaagctcctgatgaaggtgacagacctgcggatgatcggggcatgccac
gccagccgcttccttcacatgaaggtggagtgtcccaacgaactcttccctccgctcttc
ctggaggtcttcgaggaccaggaggtgtga
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