Lates calcarifer (barramundi perch): 108885170
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Entry
108885170 CDS
T04895
Name
(RefSeq) pituitary homeobox 2 isoform X1
KO
K04686
paired-like homeodomain transcription factor 2
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
108885170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108885170
Transcription factors [BR:
lcf03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain Paired-related
108885170
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Gene cluster
GFIT
Motif
Pfam:
Homeodomain
OAR
Homeobox_KN
XRCC4_C
Auxin_canalis
Motif
Other DBs
NCBI-GeneID:
108885170
NCBI-ProteinID:
XP_018534897
UniProt:
A0A4W6F6S7
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Position
LG8:20258987..20269923
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AA seq
313 aa
AA seq
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MNSMRDPLNTDHHHLTGNKLASTHYTALAMASSLQPLQRSVDSKHRLEVHTVSDTSSPES
VEKEKIQNKNDDSSDDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWT
NLTEARVRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPSYTYNNWAAK
GLTSASLSTKSFPFFNSMNVNPLSSQTMFSPPNSISSMTSSMVPSAVTGVPGSSLNSLNN
LNNLSNPSLNSGVPTPACPYAPPTPPYVYRDTCNSSLASLRLKAKQHSSFGYASVQNPAT
NLSACQYAVDRPV
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgaactctatgagggatccattaaacacagaccatcaccacctaacagggaataaactt
gcctccacgcactacactgctctggcgatggcctctagtttacagccgctgcagcggtct
gtggactctaaacaccggttagaggtgcacaccgtgtcggacacatccagtccagagtca
gtcgaaaaggaaaagatccaaaataaaaacgacgactcttcagatgacccatctaaaaag
aagcggcagcggcggcagaggactcacttcaccagccaacagctgcaagaactggaggcc
actttccagaggaatcgctacccggacatgagcacgagggaggagatagccgtgtggacc
aacctcacagaggcccgggtcagggtttggttcaagaaccggcgagccaagtggaggaaa
cgggaaagaaaccaacaagccgagctttgcaaaaacggtttcggcccgcagttcaatgga
ctcatgcagccctacgacgacatgtaccccagctacacgtacaacaactgggccgccaag
ggcctaacgtcggcctccttatccaccaaaagcttccccttcttcaactccatgaatgtc
aaccccttatcctcgcagaccatgttctcgccgcccaactccatatcctccatgacttcc
agcatggtgccatcggcggtgacaggggtgccgggctccagcctcaacagcctcaataac
ttgaacaacctcagtaacccgtctctcaactccggggtgcccacgccggcgtgcccctat
gcgcctccgacccctccttacgtgtacagggacacttgtaactccagcctggccagcctg
agactgaaagccaagcagcactcgagttttggatacgccagtgtgcagaatccggcaact
aatctgagcgcttgccaatacgccgtggacagaccagtctaa
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