Lates calcarifer (barramundi perch): 108885183
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Entry
108885183 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: endonuclease 8-like 3
KO
K10569
endonuclease VIII-like 3 [EC:3.2.2.-
4.2.99.18
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
108885183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcf03400
]
108885183
Enzymes [BR:
lcf01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
108885183
DNA repair and recombination proteins [BR:
lcf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
108885183
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Zn_ribbon_GRF
H2TH
Fapy_DNA_glyco
Zn_ribbon_RanBP
zf-FPG_IleRS
Motif
Other DBs
NCBI-GeneID:
108885183
NCBI-ProteinID:
XP_018534912
UniProt:
A0AAJ7PP86
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Position
LG8:complement(20583019..20592612)
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AA seq
582 aa
AA seq
DB search
MVEGPGCTLNGEKIRSKVQKGQKLKEIRGSLTKPTKNNPEGHAFHSFYGCQYTGVETLGK
ELFMYFGPRALRVHFGMNGSMRINPAKRKDRKDSIPVLEMHLTNDIVCFFDSTVEIRLTE
DCEQRVRAMESLDVCSSKFSFSRSEEAVRNQSSRMLCDVLLDQAVMPGVGNIIKNEALFD
SGFHPAVKVQQLTDEQIHHLVKMTRDFTLLFYKCRKSGSPLYKHYKVYKRPQCGQCFHVI
TVCRLGDNGRMTYFCEHCQRGDPSGVDISKLPVRNSLTNWAYNERTNDNVAKKEEEDWAC
QLCTLINQPAAKACDACLTPRPEVHKDDISSEASPFTTDLIKYPCTAFKKPQEELKVNWR
SAFGTSTLVFSDLSAKPKPVNSPLSPAGSHLNSLAAERGLYKYSVCQGTTSPNYASGGWQ
KQSAELSNGESLASYSHPSKKMRIDHSPFPSNNAQNGTPNTGTRKIGATSHGSSISASPS
APCCASHHRSAVLRVVHKEGKNKGRQFYACSLPRETKCNFFEWADLHFPFCHHGKRCLMR
TVLKLGPNNGRNFYTCSFQKGKQCDFFQWAENGPGVSILPGC
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atggttgaaggtccgggctgcacattaaacggagagaaaatccgttcaaaagtccagaaa
gggcaaaaattgaaggagatcagaggcagtttgacaaaacccactaaaaacaaccctgag
ggacatgccttccacagtttttatggttgtcagtacaccggtgtagaaactctggggaag
gagctcttcatgtactttggtccaagggcattgagagtccactttggaatgaatggatca
atgcgtataaaccctgccaagaggaaggataggaaggactccataccagtgctggaaatg
cacctgactaacgacattgtgtgcttctttgacagcactgtggaaataaggttgacagag
gactgtgagcagagggtgagggctatggagagtctggatgtgtgctcttctaagttcagc
ttctcccgctctgaggaggcagtgaggaaccaaagtagcaggatgctctgtgacgttctc
ttagaccaggctgtcatgccgggagtcggcaacatcattaaaaacgaagccctgtttgac
tcgggcttccacccagccgtgaaggttcagcagctgacagacgaacagatccaccacttg
gtgaaaatgacgcgtgattttacccttctgttttataagtgtcgcaaatctggctctcct
ctctacaaacattacaaagtctacaagcgtccccagtgtggccagtgctttcatgtcatc
acagtctgtcgtcttggagacaacggcaggatgacttacttctgtgagcactgtcagagg
ggagatcccagcggggttgacatcagtaagctcccagtcagaaacagtctgactaactgg
gcatacaatgagagaaccaatgataatgtggctaagaaggaagaagaggactgggcctgt
caactctgcacgctcatcaaccagccagcagcaaaagcctgtgatgcctgcctcactcca
agacctgaggtccacaaagatgacattagctctgaggcatcacccttcaccactgatttg
attaaatacccatgcactgccttcaagaaaccacaagaggagctcaaagtcaactggagg
tccgcattcgggacttccacccttgttttctctgacttgagcgcaaagccaaagcctgta
aactccccgctctccccagccgggagtcatttgaattccttggcggcagagcgaggttta
tataaatacagcgtctgccaagggacaacaagccccaattatgcctctggtggctggcag
aagcaaagtgccgagctctccaacggggaatcactggcctcctacagtcacccatccaag
aaaatgagaattgatcacagtccctttcccagtaacaatgctcaaaatggaacccccaac
actggtacacgcaaaataggagcgacaagccacggctcctccatttctgccagtcccagc
gccccttgttgtgcatcccatcatcgttcagctgtcctcagagtggtccacaaggagggg
aagaataagggacgacagttctatgcctgctcactccccagagagaccaagtgtaacttc
tttgagtgggcagacttgcacttccctttttgtcaccacggtaaacgctgtttaatgagg
actgttctgaaactaggacccaacaatggacggaatttctacacctgcagctttcaaaag
ggtaaacagtgtgacttttttcagtgggcagagaatggaccaggggtgtccatcctcccg
ggttgttag
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