Lates calcarifer (barramundi perch): 108885187
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Entry
108885187 CDS
T04895
Name
(RefSeq) platelet-derived growth factor C isoform X1
KO
K05450
platelet derived growth factor C/D
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04010
MAPK signaling pathway
lcf04020
Calcium signaling pathway
lcf04510
Focal adhesion
lcf04540
Gap junction
lcf04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108885187
04020 Calcium signaling pathway
108885187
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108885187
04540 Gap junction
108885187
09142 Cell motility
04810 Regulation of actin cytoskeleton
108885187
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
lcf04052
]
108885187
Cytokines and neuropeptides [BR:
lcf04052
]
Cytokines
Growth factors (RTK binding)
108885187
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CUB
PDGF
Motif
Other DBs
NCBI-GeneID:
108885187
NCBI-ProteinID:
XP_018534921
UniProt:
A0A4W6FBG0
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Position
LG8:complement(20621673..20664786)
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AA seq
342 aa
AA seq
DB search
MILPLLFLLASLLQQYGSAAESSHVSKFHLPSVKEQNGVQDSHQEKIITVSGEGMVHSPD
FPHTYPRNTALAWRLVASSNMRIQLTFDERFGLEDPEDGTCKYDFVEIEDLTEKTILGRW
CGSQSVPTSHTSKGSQIRIRFISDEYFPSEPGFCIRYSLLPMSVSEPEVPAVLPPSLQGV
EELSEALSGLSTVEEVMKYLEPERWQLDMEELYKPTWHVLGKSFIHNKKAKGGADLNQLR
EEVRLYSCTPRNFSVSLREELKRTDAIFWPSCLLVKRCGGNCACCSHRCYDCQCVPARVT
KKYHEVLLLKHRSGGRGLQKSMTDVPLEHHEECACVCKDDWD
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgatccttccattattattccttcttgcatcgcttctccaacaatatggctcggcagct
gaatcaagtcatgtcagcaaatttcaccttccaagtgtaaaggagcaaaacggagtgcaa
gattcccatcaggagaagatcataacagtgtctggagagggaatggtccacagcccagac
ttcccacacacttatcccaggaatactgcattggcctggagattagtggcatccagcaac
atgaggattcagctcacctttgatgagaggtttggtctggaggaccccgaagatggcaca
tgcaagtacgactttgtggagatagaggatctgactgagaagaccatcctgggtcgttgg
tgcgggtcacagtcggtaccaactagtcacacttccaagggcagtcagatcaggatccgc
ttcatctctgacgagtactttccctctgagccgggattctgcatccgctactccctcctt
cctatgagtgtatcagagcccgaagttcctgcagtcctccctccatccctgcagggtgtt
gaggagctgtcagaggctttgtcaggactgagcactgtggaggaggtcatgaagtacctg
gaaccagaacgatggcagctggatatggaagagttatacaaacctacatggcatgtgcta
ggaaaatccttcatccataataagaaagccaaaggaggggctgatctcaatcagctgagg
gaggaagttcgactgtacagctgcactccacgcaacttctctgtatccttgcgcgaggag
ctgaagaggacagatgccattttctggcccagctgcctcctggtgaaacgctgcggtgga
aactgcgcctgctgctctcaccgctgctacgactgtcagtgtgttcccgccagagtcaca
aagaaataccatgaggttctactgttgaaacatcgaagcggtggaagaggcctgcagaag
tccatgactgatgtgcccttggagcaccacgaggagtgcgcctgtgtgtgtaaagatgac
tgggactga
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