Lates calcarifer (barramundi perch): 108885232
Help
Entry
108885232 CDS
T04895
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108885232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108885232
03036 Chromosome and associated proteins [BR:
lcf03036
]
108885232
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108885232
Coactivators
SAGA/TFTC/STAGA complex
108885232
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
108885232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
108885232
NCBI-ProteinID:
XP_018534995
UniProt:
A0A4W6FZY7
LinkDB
All DBs
Position
LG10:complement(283415..296604)
Genome browser
AA seq
995 aa
AA seq
DB search
MAGASDPLEDMLFTEVDEKAVSDLVGSLESQLGDRKTPAASYSDGKREAAPAAAGQFSGK
VRDQVGSVEPQQGHPKAGLTQEPGANEPLSGQTLSSSTSSVAAGAVITTGAGLQAVGAAP
PTASPGPGPVTLPTQPAAASFHRAAVLGPSAAPSSSIAPAAEPIGTGSPGLQSLNGNGGA
VKLVNSPAVPPPAGASTVISTVSAGGSAIIASMASQPNFPVPQSSVASPTVALQRHPSPV
ASVAQNGVDPKGGQLVTQGAPSPSASTSQVMNHSNPLMHTKMLVPSQPVSGNSSVILAST
PPPTAVQSPISQTQTGTSTATVTLAPAGVKPAMNGVGQPAVAVVRPPGAPVVATSIQQQR
PGLVASPTRAAAPQLPLAVRPQQQTTIQLPPGFTMPPGMVLVRTETGQLVMVPQQVLAQA
QAKTQQAQTVTNIAQRPATPTAGATIRVSTATTVPGTPQTVRLASPAPTRMVQSPSSTVQ
KAITVAPGGTAVSVKMTTPQKAPTVITAGGVPAAKPAGIPSAPLTSTTPSPTATAPARVT
VVSQEMQENVKKCKNFLATLIKLASHNSPSPDTSKNVKALVQDLLDAKIEPEEFTTRLQA
ELKSSPQPYLIPFLKKSLPALRQSLLSSQQSLMTATPSTSAPPPAAPGSVTTAAIRPRLP
ISPASSTVRLNAPLTNTTALAVGRPGVQTVQTRTPIVIGQTLRPQGTLIRGPTTIIGKSV
VNLTAQANQKKLSDPGGGTFRDDDDINDVASMAGVNLNEENARILATSSELVGTKIRSCK
DESFLPTGLLHRRILDSAKKLGVTEVPLEVVNFISHATQSRLRSLLEKVSAVAQHRTDGG
KDEEHYEQSSDVRSQLRFFEQLERMEKQRKDEQEREILLKAAKSRARQEDPEQARLKQKA
KEMQQQELAQMRQRDANLTALAAIGPRKKRKLDSPGGAAATEVASGSGAGSSSSSSSRQQ
LRQRITRVNLRDFIFCLEQDRSTARSLMLYKALLK
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcctccgacccactggaggacatgctcttcactgaggtggatgagaaagcc
gttagcgacttggtgggctctctggaatctcaactgggcgacagaaagactcccgccgct
tcgtattccgacgggaaacgggaggcagctccggccgccgcggggcagttctcagggaaa
gtgcgcgatcaagtggggtctgtggagccgcaacaagggcatccgaaagcggggttaacc
caggaacccggcgctaatgagccactctccggtcaaaccctctcctcctctacctcctcc
gtcgccgccggggccgtaatcaccaccggagccgggctgcaagcagttggagcagctccc
ccgactgcttcccccggaccgggacccgtaactttgcccactcagcccgccgctgctagc
ttccaccgggcggctgtcctgggtccgagcgcggctcccagctcctccatcgcccccgcg
gcggagccgatcgggaccgggtctcccggactgcaaagtttaaacggaaacggcggagct
gtaaagttggtgaactcgcccgcggtccctccaccagccggggccagcactgttataagt
actgtcagtgccggggggtccgctatcatcgcctccatggcttcacagccgaacttcccg
gtacctcagtcctccgtggcgtctcccaccgtggctctgcagaggcacccgagcccggtg
gccagcgtcgcccagaacggggtagaccctaagggtggccagctggtgacccagggtgcc
ccctccccatcagcctccacctctcaggtcatgaaccacagcaaccctctgatgcacacc
aagatgctggtgcccagccagcccgtctctggaaactcatcagtcatcctggcgagtacc
ccccctcccactgcagtccagtcccccatcagccagacccagaccgggaccagcaccgcc
accgtcaccctggcccctgcgggggtgaagcctgcgatgaacggcgtgggtcagcccgcc
gtggccgtggtgaggccgccgggcgctccggtggtggccacctccatccagcagcagaga
ccggggctggtggcgagcccgacccgggcagccgcccctcagcttcctctggccgtccgg
ccccagcagcagaccaccatccagctgccccccgggttcaccatgcctcctggtatggtt
ctggtccggacagagactggtcagctggtgatggtcccccagcaggtcctggcccaggct
caggccaagacacagcaggcccaaacagtaaccaacatcgcccagagaccggcgaccccg
acggccggggccaccatccgggtcagcaccgccaccacggttcctggaacacctcagacc
gtccgcctggcctcccccgctccaaccaggatggttcagtctccctccagcactgtacag
aaggccatcaccgtggcccccggcggcacagccgtgtcggtgaagatgacgacccctcag
aaggccccgacggtgatcacagcggggggggtgcctgcggccaaacctgccggcatcccg
tccgcccccctgaccagcacgaccccctcccccaccgccacggccccggccagagtcact
gtggtgtcccaggagatgcaagaaaacgtgaagaaatgcaagaacttcctcgccacgctc
atcaagctggcgtcacacaactccccctccccagatacctccaagaatgtgaaggccctg
gtgcaggacctactcgatgctaagattgagcctgaggagttcaccactcggctgcaggct
gagctgaagtcctccccacagccctacctcatccccttcctcaagaaaagcctccctgcc
ctgcgtcagtctctgctcagcagccagcagtccctgatgaccgccacccccagcacctct
gcaccccctccggccgcccctggctccgtcaccaccgccgccatcagaccgcggctgccc
atcagtccggccagcagcaccgtcagattgaacgcaccgctcacaaacacaacagctctg
gccgtgggcagaccaggagtccagactgtgcagacacgaacacctatcgtcattggtcag
actctcagacctcaaggtactctcatcagaggacccacaaccatcatcggcaaaagtgtt
gttaacctgactgctcaggccaatcagaagaagctgagtgacccggggggcgggacgttc
agagatgatgacgacattaacgacgtggcgtctatggccggcgtcaaccttaacgaggaa
aacgcccgtatcctagcaacaagctcggagctggtcggcacaaagatccgttcctgtaaa
gacgaatccttcctgcccaccggtctgctgcaccgccgcatcctggactcagctaagaag
ctgggtgtgaccgaggttcctctggaggtggtgaacttcatctcccacgctactcagtcc
agactgcgctcgctgctggagaaggtctcagccgttgctcagcatcgtacagacggaggg
aaggatgaagaacattatgaacagtcatcagacgtccgctcgcagcttcgtttcttcgag
cagctggagcggatggagaaacagaggaaagatgaacaggagagagagattctgctgaag
gccgccaagagtcgagcccgacaagaggatcctgaacaggctcgtctgaagcagaaggct
aaggagatgcagcagcaggaactggctcagatgcgacaacgagacgccaacctcacggcg
ctcgccgccatcggaccgcgcaagaaacgcaagctggactcaccgggaggagcggcggcg
acagaggtggcatcgggttcaggtgcaggctcctcctcttcctcctcctcccgtcagcag
ctccgtcagcggatcacacgagttaacctcagggacttcatcttctgtctggagcaggac
cgcagcacagctcgctctctgatgctctacaaggctctgctgaaataa
DBGET
integrated database retrieval system
