Lates calcarifer (barramundi perch): 108885262
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Entry
108885262 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 5
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lcf03036
]
108885262
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
108885262
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
PHD_2
DEAD
AAA_22
Motif
Other DBs
NCBI-GeneID:
108885262
NCBI-ProteinID:
XP_018535039
UniProt:
A0AAJ7V3L4
LinkDB
All DBs
Position
LG12:5309569..5347704
Genome browser
AA seq
2004 aa
AA seq
DB search
MPGSLSNEDEGQDDMDFEDDMPDEDDEGERNTVPLTPLDSFFSDDDSLKQQKKKKPKKMK
EGKMPKVKKRKKEGGIQARVDSDLEETSEVEEERERPEIGSESESSMYGPTKKKKKKPKE
KKEKKPRKKKRDEDDDEDDDDDGNMKEPKSSSQLMQEWGLEDVQYGFTEDDYKTITNYKA
FSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGASATAVAAAVAAAVETVTVA
QPTSVSSSQPSSQLGPIKKAKTKEGKGPGVRKRSKTVKEVKKKPKPKKTKSKSGQSGKKK
KASSSEEDFLEESDFDDISIHSASVLSDTSGAATKKKARRGRKKRKKEDGDGYETDHQDY
CEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDEEDEEEE
PVGEEEDDHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPLK
GKVQKILHWTWGEPPLPAELPPGPDGKPNDPLTKPPLKGHPEREFFVKWAGLSYWHCSWV
SELQLELYHTVMYRNYQRKNDMDEPPPYDYGSGEEELNSEKRKSKDPHYAVMEERFYRYG
IKPEWMVIHRILNHSFDKDGDVHYLIKWRDLPYDQCTWEVDDFDIPEYDSHKACYWDHRE
QILGEDQRPLVVRKGKKLKEDHPKREVPPDAPIIDPTIKFEHQPWYINATGGTLHPYQLE
GLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWER
EFEMWAPDFYVVTYTGDKDSRAIIRENEFTFEDSAVKSGRKVFRMKKDTPIKFHVLLTSY
ELITIDQAILGSITWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEEL
FHLLNFLTPDRFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTEL
IVRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEA
PVLPNGSYDGNLLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDFLEFEGYK
YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLASADTVIIYDSDWNPHN
DIQAFSRAHRIGQNKKVMIYRFVTRGSVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSK
QELDDILKFGTEELFKDEMEAARTMGDNKDGEEGNVIHYDDDAISKLLDRSQDATEDTEI
QNMNEYLSSFKVAQYVVKEEDGEEEVEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARN
LGKGKRIRKQVNYNDTTQEDQEWQDDLSDNQSEYSVGSEDEDEDFEERPEGGRRQSRRQL
KSEKDKPLPPLLARVGGSIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKS
EREFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHV
NGKLSSPDLIPIGMELKKLTESVSSDPNTPVPASPVATQPGTPIPPEKAESLLGTAEDKE
TTDQDSKKLSEQETSSAELASVPEKAADSEESKASSEEKTGDERDRTESPSTKTEPSANP
KESTLKQTELSSSQTSPKMEPCKETEKSSDKGDTDSPLAKTEDKENKPAVADDVKSEDAL
EGRLNGDKDTLDEMDESRKEDKNGFKTKFMFNIADGGFTELHTLWQTEERAALSSGKMHD
IWHRRHDYWLLAGIVTHGYARWQDIQNDPRYAILNEPFKTEMHKGNYLEMKNKFLARRFK
LLEQALVIEEQLRRAAYLNMTQDPSHPAMALNTRFAEVECLAESHQHLSKESLAGNKPAN
AVLHKVLNQLEELLSDMKADVTRLPNMLSRIPPVSARLQMSERSILSRLTSRGSEPPPQQ
PFSQGGFGCSQMYSSSFGGGFRGPGGQPMVNYSQMPLGPYVSVSSNGPPPPTSHLDKKSL
DSLRDVATPDLKSGKPSDVICIED
NT seq
6015 nt
NT seq
+upstream
nt +downstream
nt
atgccggggtcgctgagtaatgaagacgagggacaagacgacatggattttgaagacgat
atgccagatgaggatgatgaaggtgagcgcaacactgttccccttacacctcttgacagc
ttcttttctgatgacgactccctcaaacaacaaaagaagaagaagcccaaaaagatgaaa
gagggaaaaatgcccaaagttaagaagaggaaaaaggagggaggaattcaggcaagagtt
gacagcgacctggaggagacctcagaggtggaggaggaacgggaacgtccagaaataggc
tccgagagcgagagcagcatgtacggccccaccaagaagaagaagaagaaaccgaaggag
aaaaaagagaagaaacccaggaagaagaagagagacgaggacgatgatgaagatgacgat
gatgatggtaacatgaaagaacccaaatcttccagccagttgatgcaagagtggggtctt
gaagacgttcagtatggcttcaccgaggacgactataaaaccattaccaactacaaggct
ttcagccagttcctcaggcctctcattgccaagaagaacccgaagattcccatgtcaaag
atgatgacagtgttaggggccaagtggcgagagttcagtgccaacaacccgttcaaaggc
gcatctgccaccgctgtggccgccgctgtggctgccgctgtggaaaccgttaccgtggca
cagccaacgtctgtcagcagcagccagccgagctctcagctggggccaatcaaaaaagcc
aaaaccaaagagggaaaggggccaggagtgagaaagagaagcaagactgtgaaggaggtg
aagaagaaaccgaagccgaagaagacgaaatcaaagtcgggccaaagtgggaagaagaag
aaagcatcctcgagcgaggaagacttcctggaggagtcagactttgatgacatcagcatc
cacagtgcctccgtgctttctgatacctcgggggccgccaccaagaaaaaggcccgacgt
gggcggaaaaaaaggaaaaaggaagacggtgatggctacgagacagatcaccaggactac
tgtgaggtctgccagcagggtggagagatcatcttgtgtgacacctgtcccagagcgtac
cacctggtctgtctggaccctgagctggagaaggccccagaaggcaaatggagctgtccg
cactgtgagaaagagggaatccagtgggaggccaaagatgaggaggacgaagaagaggag
cctgtaggggaggaggaggatgaccacatggagttctgcagagtgtgtaaagatggagga
gaactgctgtgttgtgacacctgcccttcctcctaccacatccactgcctcaacccgcct
ctcccggagatacccaatggggagtggctgtgtcctcggtgcatgtgtcctcccttgaaa
ggtaaagtacagaagattctgcactggacatggggagaacccccattgccagctgaactg
cccccgggccctgatggcaagccaaatgatccactgaccaagcccccactcaagggccac
ccagagagggagttctttgtgaagtgggctggtctttcatactggcactgctcctgggtc
agcgagctgcagttggagctgtatcacacggtcatgtatcggaactaccagcgaaagaac
gacatggacgagccgccgccgtacgactatggctctggggaggaggagctcaacagcgag
aagaggaagagcaaagacccccactatgctgtgatggaggaacgcttttaccgctatggc
attaaaccagagtggatggttatccaccggatactcaaccacagttttgataaggatggt
gatgtgcattacctgatcaagtggagagacctgccttatgaccagtgcacctgggaggtg
gatgattttgacatcccagaatatgacagtcacaaagcttgttactgggaccacagggag
caaattctaggggaggaccagcgccccctggtggtgaggaaaggaaagaaactcaaagag
gaccatccaaaaagggaggtccctcctgatgctcccatcatagatccaaccatcaagttt
gaacaccagccatggtacattaatgccactggaggaacactgcacccataccagctggag
ggcctgaactggttgaggttctcctgggctcaaggcacagataccatcctggctgatgag
atgggcctgggaaagactgtgcaaacgatagtgtttctctactcgctatataaggagggt
cactcgaaggggcctttcttagtgagcgcacccctctccactatcatcaactgggaaagg
gagtttgagatgtgggctccagatttctacgtggtgacgtacactggggacaaagacagc
agggcgatcatcagggagaatgagttcacctttgaagacagtgcagtgaaatcagggcgc
aaggtgttccgcatgaaaaaagacactccaatcaagttccatgtgctgctcacatcctat
gagctgatcactatagatcaagccattctgggctccatcacctgggcctgcctggtggtt
gatgaggcccacagactgaagaacaaccaatcaaagtttttcagaattctcaatgggtat
aagatctactacaagctgctgttgactgggacacctcttcagaacaacctggaggagctg
ttccacctgcttaacttcctcaccccagatcgcttcaacaatctggaaggcttcctagag
gagtttgccgacatctctaaagaggaccagatcaagaagctccacgacctgctggggcca
cacatgctcaggaggctgaaggctgacgtcttcaagaacatgcctgcaaagacagagctg
attgtcagagtggagctcagccccatgcagaagaaatattacaagtttattttgacacga
aactttgaggctctgaactccaaaggcggagggaaccaagtgtccctgctcaacattatg
atggacctgaagaagtgctgcaaccatccttacctgttccctgtggctgctgtggaagct
cctgtgttacccaacggttcttatgatggcaacctactggtgaagtcctcaggaaaactg
accctgcttcaaaaaatgctgaagaaactcaaagacgaaggacacagagttctcattttc
tctcagatgacaaagatgttggatctacttgaggattttttggagttcgagggttataaa
tatgagcgtattgatggaggaattactggaggcctgagacaggaggctatagaccgcttc
aacgcaccgggggctcagcagttctgcttcttgctttcaacacgagctggaggtcttggc
atcaatcttgcaagtgcagacactgtcatcatctacgactctgactggaaccctcacaat
gacattcaagcttttagcagagcccaccgtataggccaaaacaagaaggtgatgatctat
cgttttgtcacgcgaggctcagtggaggagcggatcactcaggtggcaaagaggaagatg
atgctgacacatctggtggtgcggcccggcctgggctccaaaactggctccatgtccaaa
caggaactggacgacatcctcaagtttggcacagaagagcttttcaaagatgaaatggag
gcagcccgaaccatgggtgacaacaaagatggtgaggagggcaacgtgattcactatgat
gatgatgccatctcgaagctgcttgaccgcagccaggacgccactgaagacacagagatt
cagaacatgaacgagtacctgagctccttcaaggtggctcagtatgtggtgaaggaagag
gatggagaggaggaggtggagcgggagatcatcaagcaggaggagaacgtggatccagac
tactgggagaaactcctccgccaccactacgaacagcagcaggaggacctggctcgcaac
cttggcaaaggcaaacgcatccggaagcaggtcaactacaacgatacgacccaggaggat
caagaatggcaggatgatctttcagacaatcagtcggagtactcggtggggtccgaggac
gaggacgaagacttcgaggagaggcctgaaggtgggcggagacagtctcgtcgccagttg
aagagtgagaaagacaaacctctgcctcccttactggcacgtgttgggggcagtattgag
gtcctggggttcaacgctcgccagaggaaagcctttctcaacgccatcatgcgctggggc
atgcctccccaggatgctttcaactctcactggctggttagggacctgagggggaagagt
gagcgtgaattcagggcctatgtgtctctgttcatgagacatctatgtgagccgggggca
gatggagcagagaccttcgctgatggagtcccccgtgagggactgtctcgtcagcatgtt
ctcaccaggatcggggtcatgtcccttgtcaggaaaaaggtgcaagagtttgagcatgta
aatgggaagctgagttctccagatctgattcccattggaatggagctgaagaagctgact
gagagtgtgtcgtctgatcccaacacccctgtgccagccagccctgtcgctacacagcct
ggcacccccatcccaccagagaaagctgagtctctcttgggcaccgctgaggacaaggag
accacagaccaagatagcaaaaaactgtcagagcaggaaacttccagtgcagagctagca
tctgtacctgagaaggcagctgacagtgaggagagcaaggccagctcagaggagaaaaca
ggagatgagagggacagaactgagtcaccctccacaaagacagagccatctgccaaccca
aaagagtccactttgaaacagacagagctgtcatccagtcaaacctcacctaaaatggag
ccctgcaaagaaacagagaagtcctcagacaaaggagatactgattcgcctctggcaaaa
actgaagacaaggaaaataagccagctgttgcagatgatgtgaagagtgaagatgcatta
gagggtcgattaaatggagacaaagacactttggatgagatggatgagagcaggaaggag
gacaaaaatggattcaaaaccaagttcatgtttaatattgctgatggaggttttacagag
ctgcacaccctctggcaaactgaagagcgagcggcgctgtcttcgggaaagatgcatgac
atctggcaccgtcgccatgactactggctgttggctggcatcgtaacacatggctatgct
cgctggcaggacattcagaatgacccacgttacgctattctgaatgagccctttaaaact
gagatgcataagggcaactacctagaaatgaagaacaagttcctggctcgccgctttaag
ttgttggagcaggctctggttattgaggagcaactgaggcgggcggcttacctgaatatg
acccaggaccccagtcacccagccatggctctcaacactcgtttcgctgaggtggaatgt
ctggccgagtcccaccagcacctgtccaaagagtctctggctgggaacaagcctgccaac
gctgtgctgcacaaagtgctgaaccagctggaggaacttctgagtgacatgaaagcagat
gttacacgactgcccaacatgctgtccaggatcccgccggtgtcggcccgtctacagatg
tctgagaggagcatcctgagccgcctcaccagccgaggcagcgaacctccaccgcagcag
ccttttagccagggtgggtttggctgctcccagatgtacagcagcagctttggtggagga
ttcagaggaccaggtggacagcccatggtcaactacagtcagatgcctctgggaccctat
gtcagtgtgtcctctaatggccccccaccccctacaagccatctggacaagaagtcactc
gactctttgagagatgtggctacgcctgacctcaagtcaggcaaacctagtgatgtcatc
tgtatcgaggactag
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integrated database retrieval system
