Lates calcarifer (barramundi perch): 108885287
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Entry
108885287 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: matrin-3-like
KO
K13213
matrin 3
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108885287
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
108885287
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
108885287
NCBI-ProteinID:
XP_050928527
UniProt:
A0AAJ8DRL2
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All DBs
Position
LG8:23977617..23987655
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AA seq
1039 aa
AA seq
DB search
MSQKSQSDGSQKHFAVGRGLLAAAETLNFSMNEQRSSRQMGGMASGVGVGGSGGVEGQDN
SAQMSRRGSGNNLGSTMKLFASLGLSPSDLDALAEIPEEDISVETLPHILMQLKSRKGDT
GERRVASSMSSDTAYRGGRDSWDDVHVGRIGGSSLGQGSARAQTSADFGYSSLQDVSSSR
GYGMNYNSSSGGGGSRDRPYSELSHRDSYGGLGMGPSSSDSVFMQRRMGSPSNGKVQDFL
GVMPPMFPHVCSLCDFDVHSTMEWNQHINGLRHAENRRLLLDMYPEWDPSMASGRGGGGL
DTPNLSAGLLGPAPMSSGQTAGGMQSSWGGGGGSGLSGKNQSGQNKLRSRVVVVKYDRKP
LSNKTLFAFTEPFGCLREHLVLKNKAFLEMNSHEEAQDMVNYYDQHPASLYGKPITFYLS
KRLMVIEKDERSSDRSMDRPVREVKGHGSQVVFFSNLPREEEKKKELLTIAGRFGIVEKH
LFLTDQAFVQLGTPEDAEMLVKYYSVNPLTIKGRPIRLNICTKYKTLNVNRRQGGSAGDG
RGQRSSSVNASSSSSGNRTSSNSRTSSSKSSSSSRTREEERKKREEENKAKAEEKPAAEE
EEEEVSGVMEGEDGGEGEGEEQVGDGDADAEEPETAESVKETVEESSGDVQEEQVPDGDD
VTDDTPGHVGGANSEGQTEPTETEALTEEHKTKQELAAEPGESAETAEGDVPADVFDQDF
LENMEDFVTLDEVAEDEEEDLGDSDTIDNTRRGGMRVVNIVGFRRGYNFLNELLGLAKPF
GKVVKHLVLDLRPEAYLQFATEDEARAMAKFYNSNVTASVCGRPVRVSHSMSYPTIQCGS
SRVVYIGQIPSSKYSDEAVLKLAEPYGKVRKYFLNRIKRECFIEMEKAEDAEKMAEDCKA
NPPKFNGKRLTVYVSRKYRQLKHGHRCPSAAKRENSSTATKSSKHPEEPPAKKAREEKPE
EREGEEERLKEEEVKKEEEEEEEEEREEVKKEEEMQSSDVSCGDEKREENSAEKNPEVCD
QKLKSCEDVSQIHFLQQNP
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagaagtcgcagtcagacggcagtcagaaacacttcgctgtgggtcgtgggctg
ctggccgctgcagagaccttgaacttcagtatgaacgaacaaagatccagccggcagatg
ggggggatggcctcaggtgtgggggtgggtggtagtggcggcgtggagggccaagacaac
agtgctcagatgtcccggcgtggcagtggcaacaatcttggcagcaccatgaagctgttt
gccagtttggggctgtcgccctctgacctggatgctctggctgaaatcccagaggaggac
atcagcgtggagacgttgccacacatcctcatgcagctcaagagccgcaagggagacaca
ggagagcggcgggtggcgtcctccatgtcctctgacactgcatatcgaggaggcagggac
agctgggatgacgtgcacgtggggaggatcggcggctcttctctgggtcagggttcagcc
cgggcccagacctctgcagactttgggtacagttccctgcaggatgtctcctccagccgg
ggctacggaatgaattacaacagcagcagtggagggggtgggagcagagacaggccatat
tctgagctttcccaccgtgattcctacggtgggcttggcatggggccgtcttcatcagac
tctgtctttatgcagcggaggatgggctccccatcaaacggaaaagtccaagacttcttg
ggagtcatgccccccatgttcccccatgtgtgctctctttgtgactttgacgttcactcc
accatggagtggaaccagcacattaatggactccgacatgctgaaaacaggcggctgctc
ctcgacatgtatccagagtgggaccctagtatggcctcgggcagaggtggtggtggactg
gacacccccaacctgtctgcaggactgctgggacctgcccccatgtcttcaggtcagaca
gcaggagggatgcagtccagctggggaggaggtggaggttcaggtctgtcgggaaagaac
cagtcgggacagaataagctgagaagccgagtggtggtggtgaagtacgacaggaagcct
ctcagcaacaagactctgttcgccttcaccgagccgttcggctgcctgagggagcacctg
gtcctcaagaacaaggccttcttagagatgaacagtcacgaggaggctcaggacatggtg
aactactacgatcagcatccagcatctctgtacggcaaacccatcaccttctacctgtcc
aagaggctgatggtcatcgagaaggacgagcggtcatcggacaggtcgatggacagacct
gtcagggaggtcaaaggtcacggcagccaggtggttttcttctctaacctccccagagag
gaagagaagaagaaggaacttctgaccatcgccggacgcttcggcattgtggagaaacac
ctttttttaactgaccaggcctttgtccagctgggaaccccggaggatgcagagatgctg
gtgaagtattacagcgtgaaccccctcaccatcaaaggaagacccatacgcctcaacatc
tgcaccaagtacaaaacactcaatgtgaaccggagacagggtgggtctgctggagacggt
cgaggccagaggagcagcagcgtgaacgcctcctcctccagctctggaaacaggacctcc
tccaactccagaacctcctcatctaaatcctcatccagctccaggaccagagaggaggag
agaaagaagagagaggaggagaacaaagcaaaggctgaggagaaacctgctgcagaggag
gaggaggaggaggtgtcaggagtgatggagggggaggacggaggggagggggagggggag
gagcaggttggcgatggagacgcagacgcagaggagccagagacagcagagtctgtgaag
gagacagtggaggagtcttcaggagacgttcaggaggagcaggttcctgatggtgatgat
gtcaccgatgacacacctggacacgtgggcggggctaacagtgagggacagacagaacca
acagaaactgaagccttgaccgaagaacacaagaccaaacaggaactggctgcagaacca
ggagagagtgcagagactgcagagggagatgtgcctgcagacgtgtttgatcaggacttc
ctggagaacatggaggactttgtgacgctggatgaagtggcagaggacgaggaggaagat
ctcggagactccgacaccatcgacaacacgaggagagggggtatgagggtggtgaacatc
gtgggtttcagacgaggttacaacttcctcaacgagctgctgggactcgccaaacctttt
gggaaagtggtcaaacacctggtgctggacttaagacctgaggcgtaccttcagtttgcg
acagaggacgaggctcgggcgatggccaagttttacaacagtaacgtcacggcgtctgtg
tgtggtcgaccggtcagggtcagccattccatgtcctaccccaccatccagtgcggctcc
agcagggtggtgtacatcgggcagatccccagcagtaaatactcagacgaagccgtcctg
aaactcgccgagccgtacgggaaagtcaggaagtatttcctcaacaggatcaagagagag
tgttttattgagatggagaaagcagaggatgcagagaaaatggctgaagattgcaaagcc
aatccgccaaaattcaacggcaaacgtctgactgtctacgtcagcaggaagtacagacag
ctcaaacacggacatcggtgtccgagcgcagcgaagagagaaaacagcagcacggcaaca
aaatcctccaaacaccccgaagaacctccggccaagaaagccagggaggagaagccagag
gagagggagggagaggaggagagactgaaggaggaagaggtgaaaaaggaggaagaagag
gaggaggaggaggagagggaggaggtaaagaaggaggaagagatgcagagctctgatgtg
agctgcggtgacgagaagagagaagaaaactcagccgagaagaatcctgaagtttgtgat
cagaaactgaagagctgcgaggacgtgagtcagattcactttttacaacagaatccgtga
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integrated database retrieval system
