Lates calcarifer (barramundi perch): 108885292
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Entry
108885292 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: phospholipid-transporting ATPase ABCA1b
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf02010
ABC transporters
lcf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
108885292
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108885292
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcf02000
]
108885292
Transporters [BR:
lcf02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
108885292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
108885292
NCBI-ProteinID:
XP_018535096
UniProt:
A0AAJ7PPG1
LinkDB
All DBs
Position
LG8:complement(23868156..23899947)
Genome browser
AA seq
2302 aa
AA seq
DB search
MSVSTQLGLLLWKNFTYRRRQTLQLLVEIVWPLFIFFILIAVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGILCNANNPCFRSPTPGESPGVVGNFNDSIISRLFSDAKKILLYSQNDK
NLDGFKELAQALQALQNSQSGFKLKHFLRDNETLSSFLLRNASFPEHSVQQITEADVNLE
KVLLKGFGVHLRDMCPRKGGKRSLEDFVTISDKQVAVLVQEVICQAPPVWLNHAEEHFMN
NLDFLKPIWSDVRSDPEAVRHVARATNKLLDSLGSLAVELASMKSWIDLRNEIIFLTHNA
TSSPSAMYQAVSRIVCGHPEGGGLQIKSLNWYEDSNYKALFGNHNSSDDEPTSLYDNSST
PYCNSLVKSMDSNPMSRMIWQALKPLLMGKILYTPHTPATQRVIHEVNRTFQELGVFRDL
GGMWEEMRPKVWNFMENSQQMDVIRTLLKNNVTAKFFHAQLSDTDWTVADISNFLSRQAD
DPRPPGTALTWREVFNETDQAIMSISRFMECVNLDKLEPVSSEERLVNQSMVLLEDRKFW
AGIVFPDVPPNATELPPKLNYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYIWGGF
SYLQDVIEQGIIRAVTGTKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVA
IILKAVVYEKEARLKETMRIMGLDNGILWFSWFISXLIPLLISAGLLVLLLKKGNLLPYS
DPGVVFLFLGSFAVVTIMQCFLLSTAFARANLAAACGGIIYFTLYLPYVLCVAWQDYIGF
GAKVFASLLSPVAFGFGCEYFALFEEQGVGIQWKNLVSSPLEEDDFSLRTAIIIMYFDSF
LYGVLTWYIEAVFPGQYGIPRPWYFPFTKSYWFGDKDGKSNKVPLNRKGNPGAVCIEEEP
AHLEPGVYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPP
TSGTAYILGRDIRTELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEQVKGEI
EQILQDTGLPHKRTSRTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWD
LLLKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKNQLGTGYYLTLVKK
EPEPSLSSCRNSSSTVSFTKKEEECASVSSSDAGLGSEHESEAATIENGPAASICDIPFV
PPDVSLVSSLILRHVPAARLVEDLGHELTYILPYSAAKDGAFVELFKDLDVKLPDLGISS
YGVSDTTLEEIFLKVAEDNGVDTDVPSDGTLPVRRRRRTHAFGGGDHQSCLRPLTEDDNN
DCNDSDGDPECRETDWLNCTDGKGSYQVAGWSLKRQQFVALMWKRFLYARRSRKGFFAQI
VLPAVFVCIALVFSLIVPPFGKYPSLELQPWMYEDQVTFISDDAPRDANMQKLLNALLDA
PGFGTRCMEGHPIPEAPCTMGDDDWHIPEVPESVQQLFSSRNWTMEDPSPACFCSCNGKK
KMLPDCPAGAGGLPPPEMKLSATDTLQNLTGRNISDYLVKTYAQIIGKSLKNKVWVNEFR
YGGFSLGARSTQVLPPANEIDDAIERVRKIFELQKGAAADRFLDSLSGFINGLDTKNNVK
IWFNNKGWHSIGAFINVMNNGILRANLPEGKDPSKYGISASNHPLNLTKEQLSQVALVTT
SVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHMQFISGVQPLLYWTANFIWDMCNYV
VPATLVVVIFICFQQKAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFTIPSTAYVVLT
SVNILIGINGSISTFVMELFGNNEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADA
LERFGENRFRSPLEWDMVGKNLFAMAVEGVVFFIITVLIQYRFCIKPRSVSALTKLGPLG
EEDEDVARERQRIVHGLGHGDILELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNG
AGKTTTFKMLTGDTVVTSGEAFLAGKSILREIDEVHQNMGYCPQFDAINELLTGREHLEL
YAVLRGVPEKEVCDVAEWGIRKLGLVKYADKAAGSYSGGNMRKLSTAMALIGAPPVVFLD
EPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQ
HLKNRFGDGYTIILRVAGPDPDLLPVMKFIESELSGSTLKEKHRNMLQYQLPSSLTSLAH
IFSILAKNKEMLRIEDYSVTQTTLDQVFVNFAKDQSDDYHSKDNSGEAERRVRRYADAEL
EPGGRRGRGQTEGERHVTPAIA
NT seq
6909 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtctccacacagctgggtctgctgctgtggaagaacttcacctacagacgacga
cagacgctccagctcctggtggagatcgtctggccgctcttcatcttcttcatcctcatc
gccgtgcggctgaactacccaccatacgaacagcatgagtgtcattttcccaacaaggcg
atgccctcggccggcacgctgccctggattcagggaatcctctgcaatgctaacaacccc
tgcttcagaagcccgacgccgggcgagtctccgggcgtcgttggcaacttcaacgactcc
ataatctctcgtctgttctcagacgccaagaagattctcctgtacagccagaacgacaaa
aacctggatgggttcaaggagctggctcaggctctgcaggcgctgcagaacagccaatca
ggcttcaagttgaagcatttcctgcgagacaatgagactctgtcgagctttctgctcaga
aacgcctccttccccgaacacagcgtccagcagatcaccgaggccgacgtcaacctggag
aaggtcctcctcaaaggtttcggggtccacctaagggacatgtgtcctaggaaggggggc
aagcggagtctggaggactttgtgacgatctcggacaaacaggtggcggtcctggtgcag
gaagtcatctgtcaggcgccgcccgtctggctgaaccacgctgaggagcacttcatgaac
aacctggacttcctcaaacccatctggagtgacgtgaggtccgaccccgaggccgtcaga
cacgttgccagggcgaccaacaaactcctggacagtcttggttcgctggcagtcgagttg
gccagtatgaagagctggatcgacctgaggaacgagatcatcttcctgacgcacaacgcc
acgtcgtcgcccagcgccatgtaccaggcggtgtccaggatcgtgtgcggtcaccccgaa
ggcggcggcctgcagatcaaatccctcaactggtacgaggacagcaactacaaggctctg
ttcggaaaccacaacagcagcgacgacgagcccacgtcgctctacgacaactcctccact
ccgtactgtaacagtctggtgaagagcatggactctaacccgatgtccaggatgatctgg
caggctctgaagcctctgctgatggggaagatcctgtacaccccccacaccccggccacg
cagagggtcatacacgaggtgaaccggaccttccaggagctcggcgtgttcagggacctg
ggaggaatgtgggaggagatgagacccaaagtgtggaacttcatggagaacagccagcag
atggacgtgatcaggactctgctaaagaacaacgtcaccgccaagttcttccacgctcag
ctgtccgacaccgactggactgtggccgacatctccaacttcctgtccaggcaggcggac
gacccccggccgccgggcaccgccctcacctggagggaggtgttcaacgagacggaccag
gccatcatgagcatctcccgcttcatggagtgtgtgaacctggacaaactggagccggtc
tccagcgaggagcgactggtcaaccagtccatggtgctgctggaggacaggaagttttgg
gcggggatcgtgttcccggacgtccctcccaacgccaccgagctgccgcccaagctcaac
tacaagatccgcatggacatcgacaacgtggagaggaccaataagatcaaagacgcgtac
tgggacccgggtcctcgtgccgacccctttgaggacatgaggtacatctggggagggttc
tcgtacctgcaggacgttattgagcaaggcatcataagagcggtgacgggcaccaaggag
aagacgggagtttacatccagcagatgccgtacccctgctacgtagacgacattttcctg
cgggtgatgagccgctccatgcctctcttcatgactctggcctggatgtactcggtggcg
atcatcctgaaggctgtggtgtacgagaaggaggcgaggctgaaggagaccatgaggatt
atgggactggataacggcatcctgtggttcagctggttcatcagcnagctgattcccctg
ctgatcagcgccgggctgttggtgctgctgctcaagaaagggaacctgctgccctacagc
gaccctggcgtggtcttcctcttcctgggatcctttgccgtggtgaccatcatgcagtgt
ttcctcctcagcacggcgttcgcccgagctaacctggcggccgcctgcggaggaatcatc
tacttcaccctctacctaccctacgtgctctgcgtcgcctggcaggactacatcggcttt
ggagccaaagtcttcgccagcctcctctctccggtggcgtttgggtttggctgtgagtac
tttgctctgttcgaggagcagggagtgggtatccagtggaagaacctggtgtcgagtcct
ctggaggaggacgacttcagcctccgcaccgccatcatcatcatgtacttcgactccttc
ctgtacggagtcctcacctggtacatcgaggccgtgtttccaggtcagtacgggatccct
cggccctggtatttccccttcaccaagtcctactggttcggagacaaggacgggaagtcc
aacaaagtccctctgaaccggaaaggaaaccctggagctgtgtgcatagaggaggagcca
gctcacctggagcccggcgtctacatcgagaacctggtgaaggtttaccgtcacggtaag
aaactggcggtggacggactgacgctcggcttctacgagggacaaatcacgtccttcctg
ggacacaacggagccggaaaaaccaccacaatgtccatcctgaccggtctgttccctccg
acctctggtaccgcctacatcctgggcagagacatccgaacggagctgagtgccatcaga
cagagtcttggagtctgtccacaacacaacgtcctcttcagcatgctgacggtggaggag
cacatctggttctacgcccggcttaaaggcctgtcggaggagcaggtgaaaggtgagatc
gagcagatcctgcaggacaccgggctgccgcacaaacgcacctccaggaccagcactctg
tccgggggcatgcagaggaaactgtctgtggctctggcctttgttggagggtcaaaggtc
gtgatcctggacgagcccacagctggagtcgacccctatgctcgcagaggaatctgggat
ttgctgctgaagtacagacagggtcggaccatcattctgtccacacaccacatggacgag
gcggacatcctgggcgaccggatcgccatcatctcccacgggaagctgtgctgcgtgggc
tcctctctctacctgaagaaccagctggggacgggttattacctgacgctggtgaagaaa
gaaccagaaccatcgctcagctcctgcaggaactcctccagcactgtctccttcaccaag
aaggaggaggagtgcgcctcagtcagcagcagcgacgcaggactcggcagcgaacatgaa
agtgaggccgctaccatcgagaatggccccgcagcgtccatctgcgacatccccttcgtc
cccccggatgtgtctctggtctcgagtctgatcctgcgccacgtccccgccgcccgcctg
gtggaggacctgggacacgagctgacctacatcctgccgtacagcgccgccaaggacgga
gccttcgtggagctcttcaaagacctggatgtgaaactgcccgacctcggcatctccagc
tatggggtgtccgacaccacgctggaggagattttcctgaaagtggctgaagataacgga
gtcgacactgatgttccctcagacggtacacttcctgttcggagacggaggaggactcac
gccttcggaggaggagaccatcagagctgcctgagacctttaacagaggacgacaacaac
gactgcaacgactccgacggggaccctgagtgcagggagacggactggttgaactgcact
gatgggaaaggctcgtatcaggtggctggttggagtctgaagaggcagcagtttgtggct
ctcatgtggaaacggtttctgtacgctcgacgatccaggaagggcttcttcgctcagatt
gttcttcccgctgtgttcgtctgcatcgccctcgtcttcagtctcatcgtccccccgttt
ggaaaataccccagtttggagctgcagccctggatgtacgaggaccaggtcaccttcatc
agcgacgatgcacccagagacgccaacatgcagaagttattaaacgctcttctggacgct
ccaggctttgggactcgctgcatggaaggacatcccatcccagaggctccctgcaccatg
ggcgatgacgactggcacattcctgaggtccctgaaagtgtccagcagctgttcagctcc
agaaactggaccatggaggatccatctccagcctgtttctgcagctgcaacggcaagaag
aagatgttgccagactgtcctgctggagccggaggtctgccgccacctgagatgaaactg
agcgccaccgacactctgcagaacctgacggggagaaacatctctgactacctggtgaaa
acctacgctcagatcatcggcaagagtttgaagaacaaagtctgggtgaacgagttcaga
tacggaggcttctcattgggcgccaggagcactcaggtcctcccaccagccaatgagatc
gatgacgccatcgaacgagtcagaaagatctttgagctacagaagggagctgctgcagat
cgattcctggacagtctgtcgggtttcatcaacggtctagacacaaagaacaacgtcaag
atctggttcaataataaaggctggcacagtatcggagcgttcatcaacgtgatgaacaac
ggcatcctgagagcaaaccttcctgaaggcaaagaccccagcaagtacggcatcagtgct
tctaaccatcctctgaacctgaccaaggagcagctgtcccaggtcgcactggtgacgacc
tccgtggacgtcctggtgtccatctgtgtgatcttcgccatgtccttcgtcccggcgagc
ttcgtggtcttcctcatccaggagagagtcagtaaagccaaacacatgcagttcatcagc
ggagtacagccgctgctctactggacggccaacttcatctgggacatgtgtaactacgtt
gtcccggcgacgctggtcgttgtcatcttcatctgtttccaacaaaaagcctacgtctcc
tccaccaacctgccggtcctcgccctgctgctgctgctctacggctggtcgatcacgccg
ctcatgtacccggcctccttcttcttcacgatccccagcacggcgtacgtcgtcctcacc
agcgtcaacatcctcatcggcatcaacggcagcatctccaccttcgtcatggagctgttc
gggaacaacgagatcggaggaatcaacgacatcctgaagaacgtcctcctcatcttccct
cacttctgtctcggccgaggactcatcgacatggtgaagaaccaggcgatggccgacgcc
ctcgagagattcggtgagaacaggttccgctctcctctggagtgggacatggtggggaaa
aacctgtttgccatggccgtggagggagtggtgttcttcatcatcaccgtcctcatccag
tacagattctgcatcaaacccaggtcggtcagtgcactcaccaaactgggaccgctgggc
gaggaggacgaggacgtggcccgagagaggcagaggatcgtccacggcctcggacacgga
gacatcctggagctccgacagctcaccaaggtgtttaagaggaagcagaagccagccgtg
gatcgactgtgtgtggggattccacctggagagtgtttcggtcttctcggtgtgaacgga
gccggaaagacaacgacgtttaagatgctgacaggagacacggtggtgaccagcggagag
gccttcctggctgggaagagtatccttagagagatcgatgaggtccatcagaacatgggt
tactgtcctcagttcgacgccatcaacgagctgctgacaggaagagagcacctggagctg
tacgccgtcctcagaggagtccccgagaaggaagtctgtgacgtggcagagtgggggatc
aggaagttgggtctggtgaagtatgcggataaagcagcaggaagttacagcggcggaaac
atgaggaaactgtcgacggccatggctctgatcggagcgccgcctgtcgtcttcctggac
gagcccaccaccggcatggaccccaaagctcgccgggccctctggaactgtatccacagc
gtcatcaaggagggacgctccgtcgtcctcacctcacacagtatggaggaatgtgaggct
ctgtgcaccaggatggccatcatggtgaacggcaggttcaggtgtctcggcagcgtccaa
cacctgaagaacaggtttggtgacggctacaccatcatcctgcgggtggccgggcccgac
cccgacctgctgcccgtcatgaagttcatcgagagcgagctgagcggcagcacgctgaag
gagaaacacaggaacatgctgcagtaccagctgccctcatctctcacctcgctcgctcac
atcttctccatcctggccaaaaataaagagatgctgaggatcgaggactactccgtcact
cagaccacactggaccaggtgtttgtgaactttgcgaaggaccagagcgacgactatcac
tccaaagacaactcaggtgaggcggaaagacgtgtccgtcgatatgccgacgctgagctc
gaacccgggggccgccgagggcggggacagactgagggagagcgtcatgtgacccctgcg
atcgcgtga
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integrated database retrieval system
