Lates calcarifer (barramundi perch): 108885358
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Entry
108885358 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: phospholipid-transporting ATPase ABCA1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf02010
ABC transporters
lcf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
108885358
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108885358
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcf02000
]
108885358
Transporters [BR:
lcf02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
108885358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
MRS2-like
Motif
Other DBs
NCBI-GeneID:
108885358
NCBI-ProteinID:
XP_050926680
UniProt:
A0AAJ8DPH4
LinkDB
All DBs
Position
LG5:20441783..20480682
Genome browser
AA seq
2271 aa
AA seq
DB search
MAVSTQLGLLLWKNFTYRRRQTIQLLIEIVWPLFIFFILISVRIHYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRNPTPGESPGVVGNFNDSIISRLFIDAKKILLYTQNDK
SYEGYKGLLRALRKMQKNIARFKLKDFLRDDETLSHFLHHNASLPRHALKQIVEADVNLE
KVLTKGFGFHLRDLCNTTPLEEFVHIADRNVSHMTQEIICKSSSDWLNKAQSHFLSNLDF
LKPIRRDVRSDPKVVQEVSAATNSLLESLGALAVELASMKSWKEMRKEILYLTANATGSP
NQMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHGNDSDSEPVSAYDNSSTPYC
NNMMRSLESSPISRMIWRALKPLLMGKILYTPDTPATQRIIHEVNKTFQELGVLRDLGGM
WEEMRPKIWNFMENSEEMDLVRTLLQNNASAAFLNAQLSETEWRVSDVFNFLSKTSEDQR
PAGSAYTWREVFNETDQAIQTISRFMECVNLDKLEPVANEERLVNKSMGLLDNQKFWAGI
VFPDIGHSNSTDLPPNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFSY
LQDVIEHGIIRAVTGSQERTGIYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAII
IKGVVYEKEARLKETMRIMGLNNGTLWLSWFISSLIPLLISAGLLVMLLKMGNLLPYSDS
GVVFLFLGSFGVVTIMQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFGA
KVVVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLASPLEEDSYNLTTSICLMLFDAVLY
GVMTWYIEAVFPGQYGIPRPWYFPFTRTYWCGEKENKNISTPLSKKGNAEAVCIEEEPGH
IDPGVYIENLVKVYSHGNKLAVDGLSLRFYEGQITSFLGHNGAGKTTTMSILTGLFPPTS
GTAYILGKDIRTELSTIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLPEEKVKAEMEQ
IVNDVGLPHKRKSRTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLL
LKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTHLGTGYYLTLVKRDY
DLTLQSCRNSASTVCYSKKTEKEDSVSESSSDAGLGSEPESETTTIDVSLISNVIFKHVP
EARLVEDLGHELTYVLPYQSAKDGAFVELFHELDDRLTDLGISSYGISDTTLEEIFLKVA
EDSGVDSVELSDGVVPTRTRRRHAFGDHQSCLKPFTEDDFDFNDSEGDPESRETDWLSGT
DGKGSYQVKGWSLKRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCIALVFSLIVPPF
GKYPSLALDPGMYGEQFTFISNDIPEDPHTNKLLGALTEKPGFGTRCMEGEPIPDTPCTA
VEDEWSVPQVSQSVKDMFDKGNWTMENPSPLCECSCEGRKRMLPECPAGAGGLPPPQMKI
SEKDTLQNLTGRNISDYLVKTYAQIIGKSLKNKIWVNEFRYGGFSLGARSSQLLSNRDQI
DDAIAQLRRRFRLERGTAADRFFHSLSSFIRGLDTKNNVKIWFNNKGWHSIGSFLNVMNN
GILRASLPAGKDPTKFGITAYNHPLNLTKEQLSQVALMTTSVDVLVSICVIFAMSFVPAS
FVVFLIQERVNKAKHMQFISGVQPFLYWLANFVWDMCNYIVPATLVIIIFVCFQQDAYVS
STNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGSVSTFVLELF
GSNEIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPLAWDMVGK
NLFAMAIEGIVFFCITVLIQYRFCIKARSSTSHLKPIGEEDEDVARERQRILSGGGQSDI
LELRQLTKVYKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLTGDSVVTSGEAY
LAGKSVTTEIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVCEVAEWGIRK
LGLVKYVDKAAGSYSGGNMRKLSTAIALIGGPPVVFLDEPTTGMDPKARRALWNAILSII
KEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAGPDPD
LRPVMEFIEQELPGSTLKEKHRNMLQYQLPSSLTSLARIFSLLSKNKEALSIEDYSVSQT
TLDQVFVNFAKDQSDEDHLKDVHLSKRDAVVVDFSQLNSFLMDSKSRESCV
NT seq
6816 nt
NT seq
+upstream
nt +downstream
nt
atggcagtctccactcaactgggtttactgctttggaagaacttcacctaccgacggaga
cagactatccagctgttgattgagatcgtctggcctctgttcatcttcttcatcctgatc
tcggtccgaatacattatccgccctacgagcaacatgaatgccatttccctaacaaggcc
atgccctcagcaggtaccctgccctgggtacaaggcatcatctgcaacgccaacaacccc
tgcttccgcaatcctacccctggagagagtcctggggtggtgggaaacttcaacgactcg
ataatctcccgtctgttcatcgatgccaagaagatcctgctctacactcagaatgataag
agctatgagggctacaaggggctgctgagggctctcaggaagatgcagaagaacattgcc
cgtttcaagttgaaggactttttgcgagacgatgagaccctttcccacttcttgcaccac
aatgcctcacttcctcgtcacgcgctgaagcagatagtggaggctgatgtcaatctggag
aaggtgctgactaagggttttggcttccatctcagagacctctgtaacaccacgccgttg
gaggagtttgtccacattgctgaccgcaacgtgtcccatatgactcaagaaattatctgc
aagtcctctagtgactggcttaacaaggcccagagccacttcctgtccaacttggacttc
cttaagcccattcggagggatgtgaggtcagaccccaaagtcgttcaggaagtctcagct
gcaaccaacagtcttctggagagcctgggagcactggccgtggagcttgccagtatgaag
agttggaaggaaatgcgaaaggagattctgtatctaaccgcaaatgccacaggctctcca
aaccagatgtaccaggctgtgtcacgtatcgtctgcggacaccccgagggaggcggcctc
aaaattaagtccctcaactggtatgaagacaacaactacaaggccctgtttggaaaccat
ggcaacgacagtgacagcgaacctgtctctgcttacgacaactcttccaccccttattgt
aacaacatgatgcggagccttgagtccagtcccatttccaggatgatctggagagccctg
aagccactgctcatggggaagatcctgtacaccccagatactccagcaacacagaggatc
atccacgaggttaataagaccttccaggaactcggtgtcctgagagaccttggagggatg
tgggaggagatgaggcccaaaatttggaacttcatggagaatagcgaggaaatggacttg
gttaggaccctgctccagaataacgccagtgctgcattccttaatgcccagctcagtgag
actgagtggcgcgtgtcagatgtgttcaactttctgtccaagacctcagaggaccaaaga
cctgcaggatccgcctatacctggagagaagtcttcaatgaaactgaccaggccatacag
accatctcacgcttcatggagtgtgtgaacctggacaagctggagccagtagcaaatgag
gagcgcttggtcaacaaatccatgggtctcctggacaaccagaaattctgggcaggaatc
gtgtttcctgacatcggccatagcaacagcactgacctgcctccaaatgtcaactacaag
atccgcatggacattgacaatgtggagaggacaaacaagattaaagatggatattgggac
cctggtcccagagcagaccccttcgaggaccttcggtacatctggggcggattttcctac
ctgcaggatgtcatcgagcacggaatcatcagggccgtcactggctcccaggagaggacc
ggtatctacattcagcagatgccctacccctgttatgttgatgacattttccttcgggtg
atgagtcggtcaatgcctctctttatgaccttggcatggatgtactcagtggccatcatc
atcaagggcgttgtgtacgagaaggaggcacggctcaaggagaccatgaggatcatggga
ctgaacaacggcacactgtggctcagctggttcatcagcagcttaatcccgctgctgatc
agtgcaggcttgttggtgatgttattaaagatgggcaacctgctgccttacagtgactcg
ggtgttgtgtttcttttcctgggatcattcggcgttgtgaccatcatgcagtgtttcctc
atcagcaccctcttctctcgtgccaacttggcagctgcctgcggagggatcatctacttc
actctctacctgccctatgtactgtgtgtcgcctggcaagactatgtcggctttggagca
aaagttgttgtgagtctgctgtctcctgttgcttttgggtttggttgtgagtactttgcc
ctgtttgaggagcaaggggtgggtatccagtggtccaacctgctggctagccctctagag
gaagacagctacaacctgaccacttctatctgcctcatgctgtttgacgctgttctgtac
ggagtaatgacctggtacattgaagctgtgtttcctggtcaatatgggatcccaaggcct
tggtatttccctttcactaggacatactggtgtggggagaaagagaacaagaacatctcc
acccctctgtcaaagaagggcaacgctgaggctgtgtgtattgaggaggagccaggtcac
atcgacccaggtgtttacatcgagaatctggtaaaggtctacagccacggaaacaagctg
gctgtagacggactgtccctgaggttctacgaaggacaaatcacatccttcctcggacac
aatggagctggcaagaccacaactatgtcaatcttaactgggttgttcccacctacctct
ggtacagcctacatcctcggcaaggacatccgcaccgaactcagcaccatccgtcagaat
ttgggtgtctgccctcagcacaacgtacttttcagcatgctgacggttgaggagcacatc
tggttctatgcccgactgaaggggctgccagaggagaaagtgaaggcagagatggagcaa
attgtcaacgatgtcggactccctcacaaacgaaagtcccgcaccagcaccctgtccggt
gggatgcagaggaagctgtcagtggccctggcttttgttgggggctcaaaggttgtgatc
ctggatgaacctactgctggggttgatccttatgcacgcaggggcatctgggacctgcta
cttaagtacagacaaggccgcaccatcatcctgtccactcaccatatggatgaggctgac
atcctgggtgaccgaatcgccatcatttcccacggcaagctgtgctgtgtaggctcctcg
cttttcctgaagactcatctggggacaggctactatctgaccctggtcaagagagattat
gacttgacacttcagtcatgcaggaattcggccagcaccgtctgctatagcaagaaaaca
gagaaggaggacagcgtatcagagagcagttcagatgctggtttgggcagtgagccagag
agtgaaactaccactattgatgtctccctcatctctaacgtgatattcaagcatgtgcca
gaggctcgcctggtggaggatctcggccatgaactcacctatgtcttaccctaccagtcc
gctaaagatggagcctttgtggagctcttccatgagcttgacgaccgactcaccgacctg
ggaatatccagctatggaatatctgacaccaccctggaagagattttcctgaaagtggct
gaggacagtggagtggactctgttgagctctcagatggagtcgtaccaaccaggactcgt
cgtcgtcatgcctttggagatcaccagagctgcctgaagcccttcactgaggatgacttt
gacttcaacgactctgaaggtgatccagaatcccgtgagactgactggctcagtggaaca
gatggcaaaggttcgtaccaggtcaaaggctggagtctgaagagacagcagtttgttgca
cttctctggaaacgattcctctacgcccggcgttccaggaaaggattctttgctcagatt
gttctccccgcggtgtttgtgtgcattgccttggtgttcagcctgattgttcctccgttt
ggaaagtaccccagtctggctctggatcccggcatgtatggagaacagttcaccttcatc
agtaatgacatacctgaggaccctcacaccaataaactactgggagccctgacagaaaaa
ccaggatttggaacacgctgcatggaaggagaacccatacctgacaccccctgcactgca
gtagaggatgagtggtcggttccgcaagtctctcaaagtgtgaaggacatgttcgacaaa
ggcaactggaccatggagaatccgtctcccctgtgtgagtgcagctgcgaggggcgcaag
aggatgctgccagagtgtccagctggtgctgggggacttccaccaccacagatgaagatc
agtgagaaagacactctccagaatttgactggcagaaacatctcagactatctggttaaa
acctacgctcagattattggcaagagtctgaagaataagatttgggtcaacgagttcaga
tatggtggattctcattgggtgccaggagttctcagcttctgtccaacagagatcaaatt
gacgatgcaatcgctcagctgaggaggcgcttccgtctggagaggggaactgcagcagat
cgtttctttcacagtctctccagttttatccgaggattggacaccaagaataacgtcaag
atctggtttaacaacaagggctggcacagcattggctctttcctcaacgtgatgaacaat
ggcatcctgcgggcaagtctgccagccggcaaagaccccacaaagtttggcatcactgcc
tacaatcacccgctcaacctcacaaaagagcagctgtcacaggtggcattgatgacgaca
tcagtggacgttttggtgtccatctgcgtgatcttcgccatgtcctttgtccctgccagt
tttgtggttttcctcatccaggagagagtgaacaaggcaaaacatatgcagttcatcagt
ggagtgcagcctttcctctactggctggccaactttgtctgggatatgtgtaactacatc
gtccccgccacactggtcatcattatctttgtgtgtttccaacaagacgcctacgtctcc
tccaccaatctgcctgtgctggccctgctgcttctgctctacggatggtcgatcacccct
ctgatgtacccagcctcatttttctttaagattcccagcacggcctatgtggttctgacc
agtgttaacatactgattggaatcaatggcagcgtctccacatttgtactggagctgttt
gggagcaatgagattggtggtatcaacgacatcctgaagaacgtgttcctcatcttccct
cacttctgtctgggcagaggactgattgacatggtgaagaaccaggcaatggctgatgct
ttggagagatttggtgaaaaccggttccgttcccctctggcctgggacatggtgggaaag
aacctgtttgcaatggccatagagggcattgtcttcttctgcatcactgtgctcattcag
taccgcttctgcatcaaggccaggtcatccaccagtcatctaaagcctattggagaagag
gatgaggatgtggccagagagcgacagaggatcctgagtggtggaggacaatcagacatc
ctagagctcagacagcttaccaaggtttataaacgaaaacagaagccagcagtggaccgg
ctgtgtgtcggcatcccccctggagagtgctttggtttgctgggggtgaatggagcagga
aaaaccagcacctttaaaatgctgacaggagactctgtggtgaccagtggagaggcctac
ttggctggcaaaagtgtaactacagagattgatgaagtgcatcagaacatgggctactgt
cctcagtttgatgccatcaacgacctgctgaccggcagagagcatctcgagttttatgcc
atcttgagaggagtgcccgagaaggaagtctgcgaggtggcagagtggggcatccggaag
cttgggttggtcaaatatgtggacaaggcagcaggcagctacagtggaggaaacatgagg
aaactgtctactgccatcgctctcataggaggaccacctgttgtgtttctggatgaacca
actacaggcatggaccctaaggcacgtcgcgccttatggaacgccatccttagtatcatc
aaagagggacgatctgtagtcctgacctctcacagtatggaggagtgtgaagcactttgc
accaggatggccatcatggtcaatggcaggttccgctgtctgggcagtgtacagcacctc
aaaaacaggttcggtgatggctacaccatcatcctgcgggtggcggggccagaccctgac
cttcggccagtgatggagttcatcgaacaggagctgccaggcagcacactcaaagagaag
caccgcaacatgttgcaataccagctgccctcgtccctcacctccctcgcccgcattttc
tccctgctctccaagaacaaggaggcactcagcatagaggactactctgtctctcagacc
actctagaccaagtgtttgtaaatttcgccaaggaccaaagtgacgaggaccatttgaaa
gatgtccacctgagcaagcgggacgctgtggtagtggacttttcccagctaaactccttc
ctcatggacagcaagagtagggagagctgtgtctga
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integrated database retrieval system
