Lates calcarifer (barramundi perch): 108885418
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Entry
108885418 CDS
T04895
Symbol
colgalt1b
Name
(RefSeq) procollagen galactosyltransferase 1
KO
K11703
collagen beta-1,O-galactosyltransferase [EC:
2.4.1.50
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf00310
Lysine degradation
lcf00514
Other types of O-glycan biosynthesis
lcf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
108885418 (colgalt1b)
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
108885418 (colgalt1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
lcf01003
]
108885418 (colgalt1b)
Enzymes [BR:
lcf01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.50 procollagen galactosyltransferase
108885418 (colgalt1b)
Glycosyltransferases [BR:
lcf01003
]
O-Glycan biosynthesis
O-linked Gal type
108885418 (colgalt1b)
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Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_25
Glyco_tranf_2_4
Anp1
Motif
Other DBs
NCBI-GeneID:
108885418
NCBI-ProteinID:
XP_018535287
UniProt:
A0AAJ7PPP8
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Position
LG5:21568128..21580959
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AA seq
609 aa
AA seq
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MLRVTSLLPALLFVLLPGLSRGYFPEERWSPESSLLAPRVVLALVCRNSAHSLPLFLGTI
ERLNYPKDRIALWVATDHNLDNTTAILRDWLIKVQNYYHYVEWRPEDEPSAFEDEVGPKH
WNNLRYEHVMKLRQAALDTAREIWADYLLVVDCDNLLTNQDVLWKLMRENKTIVAPMLES
RAAYSNFWCGMTSQGYYKRTPAYMPIRKQERRGCFAVPMVHSTYLVDLRKEASRQLAFYP
PHPEYSWTLDDVIVFAYSARMADVQMYVCNKETYGYFPVPMRSHATLQDEAESFLHTHLE
IMVKNPPLEPSSFLSLPPKQSNKMGFDEVFMINLVRRSDRRERMQRALYEQELNCKVVDA
VDGKALNKSEIESMGIKMLPGYKDPYHGRPLTKGELGCFLSHYNIWKEIADRGLQTSLVI
EDDLRFEVFFKRRLQNLLQEVTTHKLDWDLIYIGRKRMQVDHPEKSVPNIHNLVEADYSY
WTLGYMLSLQGAQKLLRAEPLTKMLPVDEFLPVMYNKHPISEYMDHFERRDLRAFSAEPL
LVYPTHYTGDLGYISDTETSVVWDNETVKTDWDRAKSRKTQEQEELSFEAQNSDVLQSEL
ENWSKRDEL
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgctccgggtcacctcgctgctgcctgccctgctgttcgttctcctgccgggcttgagc
cggggatatttccccgaggagcgctggagccccgagtcttcgctcctcgctccccgggtc
gtcctcgcgctggtctgccgcaactcggcgcactctctgccgctgttcctcggtaccatc
gagcgtctcaactacccgaaggaccgcattgcgctgtgggtggcgacagatcacaaccta
gataacaccacagccatcctgagagactggctcataaaagtgcagaattactatcactat
gtggagtggagacctgaagatgaacccagtgcctttgaagatgaggtggggcctaagcac
tggaataatctccgatatgaacatgtaatgaagctccgtcaggcagcgctggacaccgcc
cgtgagatctgggctgactatctcctggtggtcgactgtgacaacctgctcaccaatcag
gatgtgctgtggaaactgatgagggagaacaagaccattgttgctcccatgttggagtcc
agagctgcatactccaacttctggtgcggcatgacttcacagggttactataagcgcaca
ccagcctacatgcccatccgtaagcaggagcgtcgtggctgttttgccgtaccgatggtc
cactccacctatctggtggacctacggaaagaagcctctcgtcagctggctttttatcca
ccacacccagagtacagctggaccctggatgatgtcatcgtctttgcctactcagctcgc
atggcagatgtgcagatgtatgtctgcaacaaagaaacatacgggtatttcccagtgcca
atgcgttcccatgctaccttgcaggatgaggcggagagcttcttgcatacacaccttgag
atcatggtgaaaaatcctccattggagccctccagcttcctgtctcttcctccgaagcag
tctaacaagatgggctttgatgaggtgttcatgataaatctggtgcggagatctgaccgt
cgtgagcgaatgcaaagagctctgtacgagcaggagctcaactgtaaggttgttgatgct
gtggatggcaaagctctgaacaagtctgagatagagtctatggggattaagatgctgccg
gggtacaaagacccttatcatggtcgacctctcaccaagggtgaactgggctgtttcctc
tctcattacaacatctggaaggagatagcagaccgtggtctgcagacctccctggtcatc
gaggacgacctccgcttcgaggtgttcttcaaacgtcgtctccagaatctgctgcaggag
gtgacgacgcacaagctggactgggatctcatttacattggacggaaacgcatgcaggtg
gaccatcctgagaagtctgtgcccaatatacataatctggtggaggctgactactcctac
tggacactaggctacatgttgtcattacaaggagctcagaagctcctcagggctgagcct
ctgaccaagatgcttcctgtcgatgagttcctccctgtcatgtacaacaagcatccaatt
tcagagtacatggaccactttgaacgtcgagacctgcgcgccttttctgcagagcctctt
ctggtttatccaacccattacacaggagacctcggctatatcagcgacacggagacgtcg
gtggtctgggacaacgagacagtcaaaaccgactgggaccgagccaagtcgaggaaaact
caggagcaggaggagctgagctttgaggcccagaactctgacgtactgcagtccgaactg
gagaactggagcaaacgggacgagctgtga
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