Lates calcarifer (barramundi perch): 108885429
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Entry
108885429 CDS
T04895
Symbol
zgc:136908
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04137
Mitophagy - animal
lcf04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108885429 (zgc:136908)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
108885429 (zgc:136908)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108885429 (zgc:136908)
03009 Ribosome biogenesis [BR:
lcf03009
]
108885429 (zgc:136908)
04131 Membrane trafficking [BR:
lcf04131
]
108885429 (zgc:136908)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcf04147
]
108885429 (zgc:136908)
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
108885429 (zgc:136908)
Ribosome biogenesis [BR:
lcf03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
108885429 (zgc:136908)
Membrane trafficking [BR:
lcf04131
]
SNARE
SNARE associated proteins
Others
108885429 (zgc:136908)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
108885429 (zgc:136908)
Exosome [BR:
lcf04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108885429 (zgc:136908)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
Vps4_C
RNA_helicase
AAA_14
AAA_28
NPHP3_N
Parvo_NS1
ATPase_2
nSTAND3
DUF815
Mg_chelatase
AAA_7
ATPase
AAA_18
IstB_IS21
ABC_tran
AAA_17
NACHT
TsaE
AAA_24
ResIII
Sigma54_activat
NB-ARC
Viral_helicase1
PhoH
SLFN-g3_helicase
Cytidylate_kin
KAP_NTPase
Zot
AAA_6
Motif
Other DBs
NCBI-GeneID:
108885429
NCBI-ProteinID:
XP_018535305
UniProt:
A0A4W6DJH6
LinkDB
All DBs
Position
LG5:complement(21717455..21724133)
Genome browser
AA seq
808 aa
AA seq
DB search
MPGSGGADPKGEDFSTAILKQKHRPNRLIVDESLSEDSSIVSLSQNKTEELQLFRGDTVV
LRGRKQRQTVCIVLTDDTCGDERIRINRVTRSNLRVRLGDVVSIHACPDIKYGKKIHVLP
LDDTIEGLTGNLFEVFLKPYFLEAYRPVHKGDIFLVRGSMRAVEFKVVETDPSPHCIVAP
DTVIYCEGEPIKREDEEESLNDIGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPP
RGILLYGPAGTGKTLVARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP
AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVVVMAATNRPNSVDPALR
RFGRFDREIDIGIPDSTGRLEILQIHTKNMKLADDVDLERIATETHGHVGADLAALCSEA
ALQAIRKKMTLIDLEDETIDADLLNSLAVTMDDFQWALSQSNPSALRETIAEVPQVNWED
IGGLDEVKRELQELVQYPVEYPDKFLKFGMTPSRGVLFYGPPGCGKTLLAKAIANECQAN
FVSIKGPEMLTMWFGESEANVRDVFDKARQAAPCILFFDELDSIAKSRGGSAGDAGGAAD
RVINQILTEMDGMSDKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDKPSRTAILN
ANLRKSPVARDVDLEYLSGITDGFSGADLTEICQRACKLAIREAIEAEIKAERQRQNRPG
IPMDEDFDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGNFRFPSATG
TRPGGQGSGPGSGRPNLYRDEGDDDLYQ
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgccaggctcaggaggagcagacccaaagggagaagatttctccactgccatcctgaag
cagaaacacagaccaaacagactcattgtggatgaaagtctcagtgaagacagcagcata
gtcagcctgtcacagaataagactgaagagctgcagctcttcaggggggacacggtggtg
ttgagagggcggaagcaacgtcagacggtgtgtatcgtcctgactgatgacacctgtgga
gatgaacggatacggataaaccgtgtgacgcgcagcaacctgcgtgtccggcttggcgat
gtcgttagtatccatgcctgccctgatatcaagtatggaaaaaagatccatgtcctacct
ctagatgacaccattgagggcctgactgggaatctctttgaagtttttctcaaaccgtac
tttctggaggcttacaggcccgtacataaaggtgacatcttcttggtgagggggagcatg
cgggccgtggagttcaaggtggtggagacagaccccagccctcactgcatcgttgcccca
gacacggtcatatactgtgagggagagccaatcaaaagagaggacgaggaggagagccta
aatgacattggctacgacgacatcggaggctgtcggaagcagctggcccagatcaaagag
atggtggagcttcctctccggcacccagctcttttcaaggccataggagttaagcccccc
agaggcatcctgctgtacggccctgcgggcacagggaagaccctggtggcccgagctgta
gccaacgaaactggtgccttcttcttcctcatcaacggtccggagatcatgagtaagctg
gcaggagagtcagagagcaacctaaggaaggcgtttgaggaggctgagaaaaatgctcca
gccatcatctttattgatgagctggatgccatcgctcccaagagagagaagacccacggt
gaagtggagaggcgtatagtgtcccagctcctgaccctgatggatggcctaaagcaaaga
gctcatgtggttgtcatggcagcaacaaaccgacctaacagtgtggaccctgctctgaga
cgcttcggtaggttcgaccgggaaattgacattggaatcccagattcaactggcagactg
gagatcctgcagatccacaccaagaacatgaaactggctgacgacgtcgacctggagagg
atcgccacagagacccacggccatgttggtgctgacctggctgctctgtgctcggaagct
gctctgcaagccatccgcaagaagatgaccctcatagacctggaggatgaaaccattgat
gccgacctgctcaactcactggccgtcaccatggatgacttccaatgggcgctgagtcag
agcaacccatcagctctgagagagaccattgcagaggtgcctcaggtcaactgggaggac
atcggaggactggacgaggtcaagagagaactgcaagagcttgttcagtaccctgtcgag
tacccggacaagttcctgaagtttgggatgaccccgtctcgtggagtgttgttctacggc
cctccaggctgcgggaaaacccttctggctaaggccattgccaacgagtgccaggcaaac
tttgtctccattaaagggccagagatgctcaccatgtggtttggggaatcagaagccaat
gtcagagacgtctttgataaggccagacaggcagctccctgcatcctgtttttcgatgag
ttagactccattgccaaatccagaggaggcagcgctggggacgcaggtggtgcagctgac
agagtcatcaaccagatactcacagagatggacggcatgtcggacaaaaagaacgtcttc
atcattggtgccacaaacagacctgacatcatagacccagccatcctgcgaccaggccgt
ttggatcagctcatctacatcccgctcccagacaaaccctctcgcaccgccatcctaaat
gccaatctacgcaagtctcctgtcgcacgagacgtggatctggagtacttgtctggcatc
acagacggtttctccggagctgacctgacagagatctgccaacgggcctgtaagctggca
atccgtgaggccatcgaggccgagatcaaggctgagcgtcagaggcagaacagaccaggc
atccccatggatgaggactttgatccagtacctgagatcagaaaggaccactttgaagag
gcgatgcgatttgcccgtcgatctgtcagtgacaatgatatccgcaaatatgagatgttt
gctcaaactctgcagcagagccgaggttttggaaatttcaggtttccttctgctactggt
acccggcctggaggtcaggggtcaggccctgggtcaggaaggcccaatctgtacagagat
gaaggcgatgatgatctctatcagtga
DBGET
integrated database retrieval system