KEGG   Lates calcarifer (barramundi perch): 108885429
Entry
108885429         CDS       T04895                                 
Symbol
zgc:136908
Name
(RefSeq) transitional endoplasmic reticulum ATPase
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf04137  Mitophagy - animal
lcf04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    108885429 (zgc:136908)
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    108885429 (zgc:136908)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcf03019]
    108885429 (zgc:136908)
   03009 Ribosome biogenesis [BR:lcf03009]
    108885429 (zgc:136908)
   04131 Membrane trafficking [BR:lcf04131]
    108885429 (zgc:136908)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lcf04147]
    108885429 (zgc:136908)
Messenger RNA biogenesis [BR:lcf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     108885429 (zgc:136908)
Ribosome biogenesis [BR:lcf03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    108885429 (zgc:136908)
Membrane trafficking [BR:lcf04131]
 SNARE
  SNARE associated proteins
   Others
    108885429 (zgc:136908)
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    108885429 (zgc:136908)
Exosome [BR:lcf04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   108885429 (zgc:136908)
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N AAA_16 RuvB_N CDC48_2 AAA_5 AAA_33 AAA_2 AAA_22 TIP49 Vps4_C RNA_helicase AAA_14 AAA_28 NPHP3_N Parvo_NS1 ATPase_2 nSTAND3 DUF815 Mg_chelatase AAA_7 ATPase AAA_18 IstB_IS21 ABC_tran AAA_17 NACHT TsaE AAA_24 ResIII Sigma54_activat NB-ARC Viral_helicase1 PhoH SLFN-g3_helicase Cytidylate_kin KAP_NTPase Zot AAA_6
Other DBs
NCBI-GeneID: 108885429
NCBI-ProteinID: XP_018535305
UniProt: A0A4W6DJH6
LinkDB
Position
LG5:complement(21717455..21724133)
AA seq 808 aa
MPGSGGADPKGEDFSTAILKQKHRPNRLIVDESLSEDSSIVSLSQNKTEELQLFRGDTVV
LRGRKQRQTVCIVLTDDTCGDERIRINRVTRSNLRVRLGDVVSIHACPDIKYGKKIHVLP
LDDTIEGLTGNLFEVFLKPYFLEAYRPVHKGDIFLVRGSMRAVEFKVVETDPSPHCIVAP
DTVIYCEGEPIKREDEEESLNDIGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPP
RGILLYGPAGTGKTLVARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP
AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVVVMAATNRPNSVDPALR
RFGRFDREIDIGIPDSTGRLEILQIHTKNMKLADDVDLERIATETHGHVGADLAALCSEA
ALQAIRKKMTLIDLEDETIDADLLNSLAVTMDDFQWALSQSNPSALRETIAEVPQVNWED
IGGLDEVKRELQELVQYPVEYPDKFLKFGMTPSRGVLFYGPPGCGKTLLAKAIANECQAN
FVSIKGPEMLTMWFGESEANVRDVFDKARQAAPCILFFDELDSIAKSRGGSAGDAGGAAD
RVINQILTEMDGMSDKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDKPSRTAILN
ANLRKSPVARDVDLEYLSGITDGFSGADLTEICQRACKLAIREAIEAEIKAERQRQNRPG
IPMDEDFDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGNFRFPSATG
TRPGGQGSGPGSGRPNLYRDEGDDDLYQ
NT seq 2427 nt   +upstreamnt  +downstreamnt
atgccaggctcaggaggagcagacccaaagggagaagatttctccactgccatcctgaag
cagaaacacagaccaaacagactcattgtggatgaaagtctcagtgaagacagcagcata
gtcagcctgtcacagaataagactgaagagctgcagctcttcaggggggacacggtggtg
ttgagagggcggaagcaacgtcagacggtgtgtatcgtcctgactgatgacacctgtgga
gatgaacggatacggataaaccgtgtgacgcgcagcaacctgcgtgtccggcttggcgat
gtcgttagtatccatgcctgccctgatatcaagtatggaaaaaagatccatgtcctacct
ctagatgacaccattgagggcctgactgggaatctctttgaagtttttctcaaaccgtac
tttctggaggcttacaggcccgtacataaaggtgacatcttcttggtgagggggagcatg
cgggccgtggagttcaaggtggtggagacagaccccagccctcactgcatcgttgcccca
gacacggtcatatactgtgagggagagccaatcaaaagagaggacgaggaggagagccta
aatgacattggctacgacgacatcggaggctgtcggaagcagctggcccagatcaaagag
atggtggagcttcctctccggcacccagctcttttcaaggccataggagttaagcccccc
agaggcatcctgctgtacggccctgcgggcacagggaagaccctggtggcccgagctgta
gccaacgaaactggtgccttcttcttcctcatcaacggtccggagatcatgagtaagctg
gcaggagagtcagagagcaacctaaggaaggcgtttgaggaggctgagaaaaatgctcca
gccatcatctttattgatgagctggatgccatcgctcccaagagagagaagacccacggt
gaagtggagaggcgtatagtgtcccagctcctgaccctgatggatggcctaaagcaaaga
gctcatgtggttgtcatggcagcaacaaaccgacctaacagtgtggaccctgctctgaga
cgcttcggtaggttcgaccgggaaattgacattggaatcccagattcaactggcagactg
gagatcctgcagatccacaccaagaacatgaaactggctgacgacgtcgacctggagagg
atcgccacagagacccacggccatgttggtgctgacctggctgctctgtgctcggaagct
gctctgcaagccatccgcaagaagatgaccctcatagacctggaggatgaaaccattgat
gccgacctgctcaactcactggccgtcaccatggatgacttccaatgggcgctgagtcag
agcaacccatcagctctgagagagaccattgcagaggtgcctcaggtcaactgggaggac
atcggaggactggacgaggtcaagagagaactgcaagagcttgttcagtaccctgtcgag
tacccggacaagttcctgaagtttgggatgaccccgtctcgtggagtgttgttctacggc
cctccaggctgcgggaaaacccttctggctaaggccattgccaacgagtgccaggcaaac
tttgtctccattaaagggccagagatgctcaccatgtggtttggggaatcagaagccaat
gtcagagacgtctttgataaggccagacaggcagctccctgcatcctgtttttcgatgag
ttagactccattgccaaatccagaggaggcagcgctggggacgcaggtggtgcagctgac
agagtcatcaaccagatactcacagagatggacggcatgtcggacaaaaagaacgtcttc
atcattggtgccacaaacagacctgacatcatagacccagccatcctgcgaccaggccgt
ttggatcagctcatctacatcccgctcccagacaaaccctctcgcaccgccatcctaaat
gccaatctacgcaagtctcctgtcgcacgagacgtggatctggagtacttgtctggcatc
acagacggtttctccggagctgacctgacagagatctgccaacgggcctgtaagctggca
atccgtgaggccatcgaggccgagatcaaggctgagcgtcagaggcagaacagaccaggc
atccccatggatgaggactttgatccagtacctgagatcagaaaggaccactttgaagag
gcgatgcgatttgcccgtcgatctgtcagtgacaatgatatccgcaaatatgagatgttt
gctcaaactctgcagcagagccgaggttttggaaatttcaggtttccttctgctactggt
acccggcctggaggtcaggggtcaggccctgggtcaggaaggcccaatctgtacagagat
gaaggcgatgatgatctctatcagtga

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