Lates calcarifer (barramundi perch): 108885608
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Entry
108885608 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: transient receptor potential cation channel subfamily M member 1-like
KO
K04976
transient receptor potential cation channel subfamily M member 1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108885608
Ion channels [BR:
lcf04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
108885608
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Ortholog
Paralog
GFIT
Motif
Pfam:
LSDAT_euk
TRPM2
TRPM_tetra
Ion_trans
LSDAT_prok
YVC1_C
Glutaredoxin2_C
Motif
Other DBs
NCBI-GeneID:
108885608
NCBI-ProteinID:
XP_050929315
LinkDB
All DBs
Position
LG10:complement(11896950..11907833)
Genome browser
AA seq
1568 aa
AA seq
DB search
MYIRVSYDTKPDSLLHLMVKDWQLELPTLLISVHGGLQNFDLQPKLKQVFGKGLIKAAVT
TGAWIFTGGVNTGVIRHVGDALKDHSSKSRGKVCAIGIAPWGILENKEDLLGKDVTRPYQ
TMANPLSKLAVLNNSHSHFILTDNGTCGKYGSEVKLRRLLEKHISLQKINTRLGQGVPLV
CLIVEGGPNVISIALESLRDEPPIPVVVCDGSGRASDIISFAHKFSEDGGLVNDDVRDQL
LVTIQKTFNYSKSQSQQILLMVMECMKKRELITVFRMGSEGQQDIEMAILTALLKGTNAS
AADQLSLALAWNRVDIARNHIFVYGHNLPPAGAIASTTTAAAPAQEKPKSPASAPRNKTR
GKKGKGKGKAKPEPPEETDPRKLELIRWVNSLEQAMMDALVLDRVDFVKLLLENGVNIHH
FLTIPRLEELYNTKLGPANTLHAVVRDVKKGNLPPDYQITLIDIGLVLEYLMGGAYRSNY
TRKAFRNLYNNLYGLKRPKALKLLGMEDDEPRTKGKKKPKKKKEEEVEIDVDDPEVCRFK
YPFHELMLWGVLMKRQKMALFLWQRGEEAMAKALVACKLYKAMAHECSESELVDDISQDL
ENNSKEFGQLAYELLDQSYKHDEQVAMKLLTYELVNWSNSTCLKLAVAAKQRDFIAHTCS
QMLLTDMWMGCLRIGKNPGLKVILGIIFPPLILLLDFRLGDDASYHVPGGKEDGKDKDDD
AKSGKDANTDATSRKGDEEEGSTKVRKIPIGKRFFEFYDAPFTKFWFNTISYLGYLMLYN
YIILVKMERWPSIQEWTVIAYILTLGTEKVRQILMSEPGKLKQKISVWLEEYWNITDLVA
ISTFLLGLMLRLQNEPYMGYGRVIYCIDIIFWYIRVLDIFGVNKYLGPYVMMIGKMMIDM
MYFVVIMLVVLMSFGVARQAILHPDEEPTWRLARNIFYMPYWMIYGEVFADSIDLYAMEI
NPPCGEHLYDEDGKKLPPCIPGAWLTPAIMACYLLVANILLVNLLIAVFNNTFFEVKSIS
NQVWKFQRYQLIMTFHDRPILPPPLIIFSHLYILFNRLFRRCARKRQEGELDEKDRGLKL
RLNPEELKSLYEFEEQCVEEYFREKEDEQQSSSDERIKVTSERVENMSMRLEEVNERENT
MKASLQTVDLRLAQLEEIHGRMAVALEKLAGVDRLELTRTYSRNSSVCDPSSLLRQGSIN
SADGYSLYRFHMDMEEFASKQKDADEVTKTGLERQRSLRQASSICTLNTKEGVQTLEVAG
LERSRPSSCVDILISPCEQKPASPLSSQETITNVKQGSTILLDRLTDKNRLKPSSPPKRT
KSLRYYPVEDQLMSPLTKRRAMSTIIVSPPDEPGVAAETTKKSHVLLGTSSSPKRTESLR
YVPTETQSQTSPITKKRAMSSIIYNPADAGDANEWPANLEYQVHPSTFGQMPKVSTVRAL
AQQFQSSAAPVELKKEENQINQIPLESKGTLPATEPEAEQAKMKAKRNLSDTTEYLTVAN
ENYLPSHRSQSWNASERKAKCSMVSMGPRASSSERDLVEVCKLAGVGGEDAGKKMEAEKR
DDDAQENK
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtacattcgggtttcctatgacaccaagcctgacagcctgctgcatttgatggtgaag
gactggcagctggagctgcccacgttgctcatctccgttcacggaggtctccagaacttc
gacctccagcccaagctcaagcaagtgtttggcaaaggcctgatcaaagctgccgtcacc
accggagcgtggatcttcacgggtggagtcaacacgggggtgatccgtcatgtcggagat
gccttaaaggaccattcctccaagtcacgagggaaggtgtgcgcaatagggattgctcca
tgggggatcctggaaaacaaagaggacctcctcgggaaagatgttaccaggccctatcag
acgatggcgaacccactgagcaaactggctgtgctcaacaacagccactcccacttcatc
ctgaccgacaacggcacctgcgggaagtacggttccgaggtcaaactgcgtcgactgctg
gagaagcacatctccctgcagaagattaacacccgtttgggtcagggggtccccctggtg
tgtctgatagtggagggaggtcccaacgttatctctatcgccctagagagtttgagagat
gagcctcccattcctgtggtggtgtgcgatggcagcgggcgagcatctgacatcatttcc
tttgcacacaagttctcagaggacgggggcctggttaacgacgacgtcagagaccaactg
ttggtgaccattcagaagacgttcaactacagcaaaagccagtcgcagcagatcctgctc
atggtgatggagtgcatgaagaaaagggaactgatcacagtttttcgaatgggttcagag
ggacaacaagacattgaaatggccattcttacagccttgttaaaaggcacgaatgcttca
gcagcagatcagctcagtttggctctggcctggaacagagtggatattgctcgcaatcac
atctttgtttatggacacaacttaccacctgccggtgccatcgccagcaccacaactgct
gcagcaccagcacaggagaagccaaagagccctgccagcgctcctcgcaacaagacccgg
ggaaagaaggggaaaggaaaaggaaaggcaaagcccgaacctccggaggaaacagacccg
aggaagttggagttgattcgttgggtgaactctctggagcaggccatgatggatgctctg
gtgctggacagagtggactttgtcaaactgctacttgaaaatggggtcaacatccatcac
ttcctcaccattcccagactggaggagttatacaacacaaaacttggcccagctaataca
ctgcatgctgtggttagagatgtcaaaaagggaaaccttcccccagattatcagatcact
ttgattgatattggtctggtgctggagtaccttatgggtggagcctacaggagcaattac
accaggaaggctttccgtaacctctacaataatttgtatggactaaaaaggccaaaagct
ctaaagcttctgggaatggaggatgatgaaccgaggacaaagggcaagaaaaagccaaaa
aagaagaaagaggaagaagtggaaattgatgtggacgaccctgaggtctgtcggttcaag
taccccttccatgagctgatgttgtggggggtgctgatgaagcgccagaagatggcactg
ttcctctggcagcgtggggaggaagccatggcaaaggccctggtagcttgtaaactgtat
aaagccatggcccacgagtgctctgagagtgaactggtggacgacatctcccaagacctg
gagaacaactccaaagaatttggccagttggcctatgaactgttagaccagtcctacaag
cacgatgaacaggtggccatgaaactcttaacatatgaactggttaactggagtaactcc
acctgtctgaagctagctgtggctgctaagcaacgtgacttcatcgcccacacctgcagc
cagatgttgctcactgacatgtggatgggttgcttaaggatcggcaagaaccctggcctc
aaggttattctgggaattatcttccctcctctgattctactgctggatttccgtctcgga
gatgatgcgtcctatcacgtaccaggaggcaaagaagatggaaaagacaaggatgatgat
gcaaaatctggcaaggacgctaacactgatgcgacttccagaaagggagatgaggaggag
ggtagcacaaaagttcgcaaaatccctattggcaaaagattctttgaattttacgacgcg
cccttcaccaaattctggttcaacactatttcctatctgggctatttaatgttgtacaac
tacataatcctggtgaaaatggaacggtggccatctattcaagagtggactgtcatcgca
tacattctcacacttggcactgaaaaagtcagacagattctgatgtcagagccgggaaag
ctgaaacagaagataagtgtgtggttggaggagtactggaacatcacagacctggttgcc
atttctaccttccttcttgggctcatgctacggctgcagaacgagccttacatgggctac
ggcagagtcatctactgtatagacatcatcttctggtacattcgagtgctggacatcttt
ggagtcaacaaatacttgggaccctatgtgatgatgatagggaagatgatgatcgatatg
atgtactttgtagtgatcatgctggtagtgcttatgagctttggggtggcgcgacaagcc
atccttcacccagatgaggagccaacctggcgcctggccagaaacattttctacatgccc
tactggatgatctatggagaggtttttgcggactcgatagacctctatgcaatggaaatc
aaccctccatgtggtgaacatttatacgatgaggatgggaagaaactgcccccatgcatc
cccggtgcctggctcacacctgctattatggcctgctaccttctcgtggcaaacattctt
ctggtcaacttgctcattgctgtcttcaacaacactttctttgaagtcaagtcgatttcc
aaccaggtgtggaagttccagcgatatcagctaatcatgacttttcacgatcgtcccatc
ctgccgccacctctcatcatcttcagccacctctacatcctcttcaacaggctgtttcga
cggtgtgccaggaaaaggcaggagggagagctggacgagaaggacagaggcctcaagctt
aggttgaatccagaggagctaaaaagtctgtacgagtttgaggaacagtgtgtggaggaa
tatttccgtgagaaagaggacgagcagcagtcctccagtgatgaacgcatcaaggtcacc
tcagaaagagttgagaatatgtccatgcgtctggaggaggtaaatgagcgggagaacact
atgaaggcctccctgcaaacggtcgatctacgcctggcccaactggaagagatccacgga
cgaatggcggttgccctggagaagctcgccggagtggacagattggagctaaccagaacc
tattcacgaaactcctctgtgtgtgacccttcctccctccttcgccagggcagcatcaac
agtgctgatggctacagcctttaccgcttccatatggacatggaagagtttgcatcaaag
cagaaggatgcagatgaggtgacaaaaactggtctagagagacagaggagtctgcgacaa
gcatccagtatttgtactctcaacacgaaggaaggtgtgcagaccttagaggttgctggt
ttggagagatcacgacccagctcctgtgtggacattctcatatctccgtgtgaacaaaag
cctgcttctccattatcaagtcaagagaccataaccaatgtaaaacaaggcagcacaata
ctgctagatagactaacagacaagaatagactaaagccttcctcccctccaaaacggact
aaatccttgagatactatccagtcgaagaccaactcatgtctcctctgacaaagaggagg
gctatgagcaccatcattgtcagccctcctgatgaaccaggggtagcagctgaaaccaca
aagaaatcccatgtgctgctgggaacgtcctcttctccaaagaggacggaatctttgagg
tatgtccccaccgaaacccaaagtcaaacttctccgatcacaaagaagagagctatgagc
agcatcatctacaacccagctgatgcaggtgatgcaaatgagtggccggcaaacttggag
tatcaggtgcaccccagcacttttggtcaaatgcctaaagtatcaacagtcagagctctt
gcccagcagtttcaaagcagcgctgcacctgtggagcttaaaaaagaggagaatcagatt
aatcaaattcctttggaaagtaagggaactctcccagcaacagaacccgaggcagagcaa
gcaaagatgaaggcaaagagaaacctctctgacaccactgagtacctgactgtagctaat
gaaaactatctgccgtctcacagatcacagagctggaatgccagtgagaggaaagcgaag
tgctccatggttagcatggggcccagagcctctagcagcgagagagaccttgttgaagtc
tgcaagttggcaggtgttggaggggaagatgccggaaagaagatggaggcagagaagaga
gacgatgatgcgcaggaaaataaatga
DBGET
integrated database retrieval system
