Lates calcarifer (barramundi perch): 108885614
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Entry
108885614 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: cadherin-4-like
KO
K06797
cadherin 4, type 1, R-cadherin
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04514
Cell adhesion molecule (CAM) interaction
lcf04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
108885614
04519 Cadherin signaling
108885614
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108885614
Cell adhesion molecules [BR:
lcf04515
]
Cadherins
Major cadherins
108885614
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
Cadherin_FAT4_N
Ig_CLSTN
F59B103_C
NCMAP
Stevor
DUF5527
Motif
Other DBs
NCBI-GeneID:
108885614
NCBI-ProteinID:
XP_018535545
UniProt:
A0AAJ7PQ04
LinkDB
All DBs
Position
LG12:14936702..15119371
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AA seq
925 aa
AA seq
DB search
MNVGCVILACTLLVGASSGSKAGQPLKPPCRPGFSQNFYTVIVSRDVLHGQSILKDTTLS
SERVKFEDCQRSRAVGFVSSDPNFSVRPDGTVYAEQEVANLSDPVQFMVTARGLHDPHIW
ETTVKLALAGHPHPLPLTKVGIEEMLSRVWDTQPRVIKFPRKHQRGSSANGLRRQKRDWV
IPPINVPENSRGPFPHMLVRIRSDQDKDVGIRYSITGAGADQPPSGIYNIDPISGNMFVT
QPLDREERASFHLRAHAVDMNGNQVENPIDLYIYVIDMNDNRPEFQKQVYNGSVAEGSKP
GSSVMQVTATDSDDSTTANGMVRYRILSQTPHSPIPNMFTINSETGDIVTVAAGLDREKV
SQYTIIVQATDMEGNLNFGLSNTATALISITDINDNPPELTARTFSGEVPENKVNVVVTN
LTVVDRDQPHSPNWNAVYRIVSGDDSGHFTIRTNPITNEGMLTVVKPVDFEMNNAFMLTV
VVSNQAHLASGIPSSLQSTAGVTISVQDVNEPPVFPGNPKMIRFEEGVPAGTTLTVFAAR
DPDHFIHQIVRYSKLSDPANWLKINRTNGQITTMALLDRESMYVKNNVYEATFLAFDNGS
PQASGTGTLQIYLIDVNDNAPVLIPREAQVCERARPNSRINITASDADADPNAGPFVFEL
PSFPASVRRNWTISRLNGDYAQLRLRIPYLEAGVYEIPVIVSDSGNPPLSNRSVIRVKVC
PCDDNGDCSATGAVAAAGLGTGAIIAILICIIILLSMVLLFVVWMKRREKERQAKPLLID
PEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPESLDHIINKPAGVRRVDERPVITESQYP
VRPSLPHPGDIGDFINDGLRAADNDPTAPPYDSLLVFDYEGSGSTAGSVSSLNSTSSGDQ
DYDYLNDWGPRFKKLADLYGGGDDD
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgaacgttggctgcgtcatcctggcgtgtaccttacttgtgggagcatcctcggggagt
aaggcaggccagcccctcaaacccccatgcagaccaggcttctcccagaacttctacaca
gtgattgtctcgagagacgtactgcacggccagagcattctcaaagataccaccctgtcc
agtgaacgtgtgaagtttgaagattgccagcgcagcagagcagtgggctttgtaagcagc
gaccccaatttcagcgtgagacctgatgggacggtgtatgcagagcaggaagtggccaac
ctgtcagaccctgtccagttcatggtgacggcccgagggctccatgacccacacatctgg
gagaccactgttaaactggctttggctggacacccccatcctttaccacttacaaaggtt
ggcattgaagaaatgctgtcaagagtctgggacacccaacccagagttatcaagtttcct
cgaaaacatcagagaggctcctctgccaatgggctaaggcgacagaagagagactgggtc
atcccgcctatcaatgtgcctgaaaactcccgaggacccttccctcacatgcttgtcaga
atccgctcagatcaggacaaggatgttggcattcgctacagcatcacgggagcaggcgct
gatcagcctccgagtggcatctacaacatagatcccatcagcggcaacatgtttgtcacc
caacctctggaccgagaggagagagcctccttccacctgcgagcccatgcagtggatatg
aatggtaaccaagtggagaatccaatcgatctgtacatctatgtgatcgacatgaacgac
aacaggcctgagtttcagaagcaggtgtacaatggctctgtggctgaagggtccaaacca
ggctcgtctgtgatgcaggtgacagccaccgactcagacgactccaccacagcgaacggc
atggtccgctaccgcatcctctcacagacgccacacagccccatccccaacatgtttacc
atcaacagtgagactggagacatagttacagtggcagctggcctggacagagagaaagtg
tcccagtataccatcattgtccaggccaccgacatggagggcaacttgaactttggcttg
tccaacacagctacagctctcatctccattactgacatcaatgacaatcccccagagctg
acagccaggacgttttcgggcgaagtgccagagaacaaggtgaatgtggtggtgaccaac
ctgacggtggtggacagagaccagccccacagccccaactggaacgctgtctaccgcatc
gtaagcggagacgactcgggacacttcaccatccgcaccaaccccatcaccaatgagggc
atgctgacggtggtcaagccggtggattttgagatgaacaatgcctttatgctcacagtg
gtggtgtccaaccaagcccacctggccagcggcatcccgtcctcactccagtccacagcg
ggagtcaccatctctgttcaagatgtgaacgagcctcccgtcttccccggcaaccccaag
atgatccgctttgaggagggtgtgcccgcagggacaactcttacggtgtttgctgcccga
gatcccgatcacttcatccaccagattgtcaggtactccaaactgtcagatccagctaac
tggctgaagatcaacaggaccaatggtcagatcaccaccatggccctgctggaccgggag
tctatgtatgtcaagaacaatgtgtatgaggccacattcttggcattcgacaatggctct
cctcaagccagcgggacagggaccctccagatctacctgattgatgtgaacgacaacgct
ccggtgctaataccccgggaggcccaagtgtgcgagcgtgcacgccccaactccaggatc
aacatcacggcatcagatgctgacgcagaccccaacgcgggccccttcgtcttcgagctg
ccttctttccctgccagcgttcgccgcaactggaccatttccaggctgaacggtgactat
gctcagctcaggctaaggattccttacctggaggcaggtgtgtacgagattcccgtcatc
gtgtcggactctgggaaccctcctctgtccaaccgctccgtgatcagggtcaaagtgtgt
ccctgtgacgataacggggactgcagcgccacaggggctgtagcagccgccggcctcggt
accggagccatcatcgctatactcatctgcatcatcatactgctcagcatggttctgctg
ttcgtggtgtggatgaagcgcagagagaaggagaggcaggcaaagcccctgctcatcgac
cctgaggacgatgtcagagacaacatcctcaagtacgatgaggagggaggaggagaggag
gaccaggactacgacctgagccagctgcagcagcccgagtctctggaccacatcatcaat
aagccggcaggagtgcgcagggtggacgagaggcctgtcatcactgagtcgcagtacccc
gtcagacccagtctgccccaccctggagacataggagatttcatcaatgatggtctgagg
gcggcagacaacgaccccacggctcctccctacgactccctgctggtgtttgactacgag
ggcagcggttcgaccgccggctctgtcagctcactcaactccaccagctcaggggaccag
gactacgactacctcaacgactggggccctcgcttcaagaagctggccgacctctacgga
ggaggggatgatgactga
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