Lates calcarifer (barramundi perch): 108885621
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Entry
108885621 CDS
T04895
Name
(RefSeq) mRNA export factor isoform X1
KO
K14298
mRNA export factor
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108885621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108885621
03036 Chromosome and associated proteins [BR:
lcf03036
]
108885621
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108885621
Chromosome and associated proteins [BR:
lcf03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
108885621
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_EML_2
WDR55
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_SPT8
NBCH_WD40
Exonuc_X-T_C
Motif
Other DBs
NCBI-GeneID:
108885621
NCBI-ProteinID:
XP_018535555
UniProt:
A0AAJ7V4A7
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Position
LG12:15184870..15190049
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AA seq
369 aa
AA seq
DB search
MSLFGTSSGFGTGGTGVFGSTTTDSHNPMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGG
SWANDVRCWEVQDNGQTVPKAQQMHTGPVLDACWSDDGSKVFTASCDKTAKMWDLNSNQA
MQIAQHDGPIKAIHWIKAPNYSCIMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCADVVY
PMAVVATAERGLIVYQLENQPSEFRRIDSPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
AIHYINPPNPAKDNFTFKCHRSNGTNTTTPQDIYAVNAISFHPVHGTLATVGSDGRFSFW
DKDARTKLKTSEQLDQPITACCFNHNGNIFAYASSYDWSKGHEYYNPQKKNYIFLRNAAE
ELKPRNKKW
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgtttgggacgagctccgggtttggaacaggagggacaggtgtctttggaagc
acaacaacagacagtcataatcccatgaaggatgttgaagtgacttcacctccagatgac
agcatcagctgtcttgctttcagtccacccacgatgccagggaacttcctcattggagga
tcctgggccaacgatgtcaggtgctgggaggtgcaggacaatggacagactgtccctaaa
gcccagcagatgcacacaggtccagttctggatgcgtgctggagtgatgacgggagtaaa
gtgttcactgcttcctgcgataagacagctaagatgtgggatctcaacagcaatcaagca
atgcagattgctcagcatgatggtccgatcaaagcaatccactggataaaagcccctaac
tacagctgtatcatgactggaagctgggataaaacactgaagttctgggacacacgctct
cccaatcccatgatgtcgctgcagatgccagagagatgctactgtgcagatgttgtttat
cccatggcggtggtggccacagctgagagaggcctgatagtgtaccagctggagaaccag
ccctctgaattccgcagaatagactctcccctcaaacatcagcaccgctgtgttgccatt
ttcaaggacaaacagaacaaacccacaggctttgcactgggaagcattgagggccgagtg
gccatccactatatcaaccctccaaacccagccaaagacaacttcaccttcaagtgccac
aggtccaatggaaccaacacaaccactccacaggacatctatgctgtgaatgctatctcc
ttccatcctgtccatggcacgctggctactgtgggctcagacgggcgcttcagcttctgg
gacaaagacgcccgcaccaagttgaagacctcagagcagcttgaccagcccattacggct
tgctgcttcaaccacaatggcaacatctttgcatatgcttccagttatgactggtcaaag
ggccatgagtactacaacccccagaaaaagaactacatcttcctgaggaacgctgccgag
gagctgaagcctcggaacaagaaatggtga
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integrated database retrieval system