KEGG   Lates calcarifer (barramundi perch): 108885621
Entry
108885621         CDS       T04895                                 
Name
(RefSeq) mRNA export factor isoform X1
  KO
K14298  mRNA export factor
Organism
lcf  Lates calcarifer (barramundi perch)
Pathway
lcf03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:lcf00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    108885621
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcf03019]
    108885621
   03036 Chromosome and associated proteins [BR:lcf03036]
    108885621
Messenger RNA biogenesis [BR:lcf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     108885621
Chromosome and associated proteins [BR:lcf03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    108885621
SSDB
Motif
Pfam: WD40 Beta-prop_EML_2 WDR55 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd WD40_RFWD3 ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_IFT140_1st Beta-prop_SPT8 NBCH_WD40 Exonuc_X-T_C
Other DBs
NCBI-GeneID: 108885621
NCBI-ProteinID: XP_018535555
UniProt: A0AAJ7V4A7
LinkDB
Position
LG12:15184870..15190049
AA seq 369 aa
MSLFGTSSGFGTGGTGVFGSTTTDSHNPMKDVEVTSPPDDSISCLAFSPPTMPGNFLIGG
SWANDVRCWEVQDNGQTVPKAQQMHTGPVLDACWSDDGSKVFTASCDKTAKMWDLNSNQA
MQIAQHDGPIKAIHWIKAPNYSCIMTGSWDKTLKFWDTRSPNPMMSLQMPERCYCADVVY
PMAVVATAERGLIVYQLENQPSEFRRIDSPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV
AIHYINPPNPAKDNFTFKCHRSNGTNTTTPQDIYAVNAISFHPVHGTLATVGSDGRFSFW
DKDARTKLKTSEQLDQPITACCFNHNGNIFAYASSYDWSKGHEYYNPQKKNYIFLRNAAE
ELKPRNKKW
NT seq 1110 nt   +upstreamnt  +downstreamnt
atgagtttgtttgggacgagctccgggtttggaacaggagggacaggtgtctttggaagc
acaacaacagacagtcataatcccatgaaggatgttgaagtgacttcacctccagatgac
agcatcagctgtcttgctttcagtccacccacgatgccagggaacttcctcattggagga
tcctgggccaacgatgtcaggtgctgggaggtgcaggacaatggacagactgtccctaaa
gcccagcagatgcacacaggtccagttctggatgcgtgctggagtgatgacgggagtaaa
gtgttcactgcttcctgcgataagacagctaagatgtgggatctcaacagcaatcaagca
atgcagattgctcagcatgatggtccgatcaaagcaatccactggataaaagcccctaac
tacagctgtatcatgactggaagctgggataaaacactgaagttctgggacacacgctct
cccaatcccatgatgtcgctgcagatgccagagagatgctactgtgcagatgttgtttat
cccatggcggtggtggccacagctgagagaggcctgatagtgtaccagctggagaaccag
ccctctgaattccgcagaatagactctcccctcaaacatcagcaccgctgtgttgccatt
ttcaaggacaaacagaacaaacccacaggctttgcactgggaagcattgagggccgagtg
gccatccactatatcaaccctccaaacccagccaaagacaacttcaccttcaagtgccac
aggtccaatggaaccaacacaaccactccacaggacatctatgctgtgaatgctatctcc
ttccatcctgtccatggcacgctggctactgtgggctcagacgggcgcttcagcttctgg
gacaaagacgcccgcaccaagttgaagacctcagagcagcttgaccagcccattacggct
tgctgcttcaaccacaatggcaacatctttgcatatgcttccagttatgactggtcaaag
ggccatgagtactacaacccccagaaaaagaactacatcttcctgaggaacgctgccgag
gagctgaagcctcggaacaagaaatggtga

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