Lates calcarifer (barramundi perch): 108885650
Help
Entry
108885650 CDS
T04895
Symbol
fgd5a
Name
(RefSeq) FYVE, RhoGEF and PH domain-containing protein 5 isoform X1
KO
K05724
FYVE, RhoGEF and PH domain containing 5/6
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
108885650 (fgd5a)
Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
Pleckstrin homology (PH) domain-containing proteins
Dbl-Like RhoGEF family proteins
108885650 (fgd5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGEF
PH
FYVE
SOS1_NGEF_PH
RHG20_PH
PH_9
PH_20
IQ_SEC7_PH
FYVE_2
PH_11
Motif
Other DBs
NCBI-GeneID:
108885650
NCBI-ProteinID:
XP_018535602
UniProt:
A0A4W6FDU6
LinkDB
All DBs
Position
LG12:complement(15573335..15606173)
Genome browser
AA seq
1540 aa
AA seq
DB search
MNADFQNPLQVPQPKVRSHLTIKVQSKLMSRPCPPVRGPKPPVAPKPRPLYESHPQGEPC
PPQSLSNGDLAHSDEETEDLHEMAEENQEKEEKSKTFNNGTGDNGKEVILEGENEDEREK
EVNILDNDGDIDSIGSEDTVKGDDGSTVDTTEDENTDNDLNQPEGGHNTDDENISTPSLL
LTETEHDAREEEEEEQQSFSKKTEIPCDSTGLSDENVEEQNLDQTQSLSQCDEDSDIGLN
EPDSEQSEECLHCDLIADETNLEAEGFAFGFSMLPTVNEEYPYDVIGPTDDASDTCESCD
PAETGDTEVWQPERATKDLSGCFRFTSSTEDVFGPYSVIEAVPGDTSATADPEWSQDDTD
DKPADELQTPGASNQEPYYVSSDDVDKLDDKQALSEQGETEEGTEQSNQHKDKAKDSESA
DEYADIDDSLCPKTDDIEQLECVSSEDYVEIGDEDEEEETEKKHIKGKSAKERTAKREQA
FHSQRKSCQPRLRLCNITVPADLDLGRTPELTNRVVFAHTTEAFEEDIEELDCHIVPYYE
DTDSDSEEHIYEEAGFDSEGENFVTLDRKTIVTRSRSYSGKVPGYVPETVPEETGTEYQN
HDYCTVALDKSSEPLSHSQQPGLNCLVPSVKSRRFLLYSRSAEGPELSLTTPTEISHSLR
DEIRIKRKDDNLSLPCVITSSGSFSQRSHQSSSGVSTPTSLVDIPPPFELAYITKRPVTK
SSPSLLIQHEPSDIPKKKKSSFKRFLALKFKRKTDSKGFSDGSVRSSRSSSESSHHGPTR
VIELDRRSTGSSPQLQSRMVNPQPRPSDLPSAFILYNDHQRRKGDPKAYGRGVSRVESFE
ERSRRSVMPLPLTKPRSISFPSADTSDYENIPAMSSDYENIQIPGRPTRSHTVTEFFEDQ
NRTAVSCNENDGYVDMNSFPGIDSKPQTSKADTESAYTEPFPVNPISAGLSADEDHGRTS
EEEEGVAEQSYDRQIDGRSRAFYVAKELVDSERLHVNAIKYLEEDFRSAVTDAVGEEGEP
VLEEQRLREILSVLPQVYALHSSILTELEERITQWEESQKVVDVILSRQEDFAVFDTYIS
EYDRSMSLLEESRRNNPAFASIVKKFETRGPEEVEVPLKHQLLQVIVRVLQYRMLLTDYL
NNLSPDSKEYEDTQAALVIVSEVADQANDNLKQGENLLRLVHIEYSVKGKRDLLKPGRMF
VKEGTLMKVSRKNRQPRHLFLMNDIMLYTYPQQDGKYRLKNTLSLSGMKVSKPVLDNVLN
CLRIEVSDITITLSASSVGEREDWFHTLSRAIADHAAGLCTFGGPCNEAREKLWMALGEA
APVLVPVSHVMMCMNCTTDFSLTLRRHHCNACGKVVCRACSRNRYPLKYLKDRVVKVCDH
CYAELRKRGGSVSGACGSSSPRTHRASRPLSAVFQSLQPPSLWKSRKSTASLNQVSLGVE
GSTMSGSLQRRKKSKRKWKRLWFLLKDKVLYTFTAREDKVASESLPLQGFTVKLTERPEG
EESSNVFHLYHKKTLYYTFRADDQHTARRWVNAMEEATVL
NT seq
4623 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcagattttcaaaatccactgcaagtccctcagcccaaggtccgcagtcatctg
accatcaaagtacagtccaagctgatgtccaggccgtgtccccctgtccgtggtccaaaa
cctcccgtcgcccccaagccaagaccactgtatgagtctcacccacagggggagccctgt
cccccacagagcctcagtaacggagacctggctcactctgatgaggagactgaagatctc
catgagatggcagaggagaatcaggagaaagaggagaaaagtaagactttcaacaatggc
acaggagacaatggcaaagaggtcatattagagggagaaaatgaggatgagagagaaaaa
gaagtaaacatattagataatgatggtgacatagacagcattggctctgaggacacagtc
aaaggagatgatggttctactgttgacactactgaagatgaaaacactgacaatgacttg
aaccagcctgagggtggccataacactgatgatgaaaatatatcaacaccttctcttctt
ctgactgaaacagaacatgatgcaagagaggaggaagaagaggagcaacagagttttagt
aaaaagactgaaatcccctgtgattctacaggactttctgatgaaaatgtagaagagcaa
aaccttgaccaaacacagtcgctcagtcaatgcgatgaggacagtgatattggacttaat
gaaccagatagtgagcaaagtgaggagtgcttgcattgtgacttaatcgcagacgagact
aacctggaagccgaagggtttgcatttggattcagcatgcttccaaccgtaaatgaggaa
tatccctacgatgtgattggccccactgatgacgctagtgatacatgtgagtcatgtgat
ccagctgaaacaggggacacagaggtatggcaaccagaacgggccaccaaggacctgtcc
ggctgttttcgattcacatccagcactgaggatgtttttgggccttattcagtcatagaa
gctgtcccaggggatacgagtgccaccgctgaccccgagtggagtcaggacgatactgat
gacaaacctgcagatgaactgcaaacaccaggtgcttctaaccaggagccttactatgtg
tcatcagatgatgtggacaagctagatgataagcaagccctctcagaacagggtgagact
gaggagggcaccgagcagtcaaatcagcacaaagacaaagcgaaggacagtgagtcggca
gatgagtatgcagacattgatgattcactctgtcctaaaacagatgacattgagcagctg
gagtgtgtctcatcagaggattatgttgaaataggtgatgaggatgaagaggaggaaaca
gaaaagaaacatatcaaaggaaaaagtgcaaaagagagaacagcaaaacgagagcaggcc
ttccacagccagagaaaaagctgtcagcctcgcctcaggctgtgcaacatcacagtgcca
gcagacctagacctgggccgcaccccagagctcaccaacagagtggtgtttgcccacacc
actgaggcctttgaagaagacattgaggaactggattgccatattgtgccttactatgaa
gacacagactctgacagtgaagagcatatatatgaagaggcggggtttgactcagagggg
gagaactttgtaaccctggataggaagactattgtcacacggtcacgctcttattctggg
aaagttccaggttatgtcccagaaactgtaccagaagagacagggacagagtaccagaat
catgactactgtacagtggccttggataagagcagtgaaccgctcagccattcacagcag
cctggtctcaactgtttggtcccatctgtgaagtctcgccgcttcttattatactcccgg
tctgcagagggtccagaactgtccttgaccaccccaacagagatcagccattctctgagg
gatgagatcaggataaaaaggaaagatgataatctctccctcccatgtgtcataacctcc
tccggaagcttctcccagcgtagccatcaatcatctagtggtgtttccacaccaacctcg
ctagtggacattccaccaccctttgagctggcatacatcactaaaagaccagtcaccaag
agttccccatccctcctgatccagcatgaacccagtgacatacctaagaagaagaaatcc
tcttttaaacgctttctggcgctcaagttcaagaggaagacagattcaaagggtttcagt
gatggaagtgtccgctcctcacgttcttcctctgagtccagccaccatggccccacaagg
gtcatagagcttgatcgtagaagcaccggcagctctcctcagctccagtcccgcatggtg
aaccctcagccacgtccttcagacctgccatctgcctttatcctttacaatgaccatcag
aggaggaaaggcgaccccaaagcttatgggagaggtgtctccagagtggagtcctttgag
gagcgttctcgccgctctgtcatgccgttgcctttgaccaaaccccgctccatctccttc
cccagtgcggacacctcagactatgaaaacatcccagctatgagctcagactatgagaac
atccagatcccaggcaggcccaccagatctcacacggtgactgaattttttgaggatcaa
aaccgcacagcagtttcctgcaatgagaatgatggctatgtggatatgaacagtttccct
gggattgacagcaaaccccagacatcgaaagcagacactgaaagtgcctacacagagcct
ttcccagtgaaccccatctctgctgggctgtcagccgatgaggaccacggccgtacctca
gaggaagaagagggggtggcagagcagagttatgaccggcagattgatggccgatcccga
gcgttctatgtcgccaaagagctcgtcgactccgagagactacacgtcaacgccatcaag
taccttgaagaggactttaggtcagcggtgactgacgcggtgggtgaagaaggggagcca
gtgctggaggagcagaggctcagggagatactgagcgtgctcccccaagtctacgccctc
cacagcagcatcctcaccgagctggaggaacgcattactcagtgggaggagagccaaaag
gtggtcgatgtaattctgtctcgtcaagaggattttgccgtgtttgacacctacatctca
gagtatgatcgcagcatgtccttactggaggagagtcgcaggaacaacccagccttcgcc
agcatcgtcaagaaatttgagacaagaggcccagaagaagttgaagtcccactgaaacac
cagctgctacaggtcatagtgagagtacttcagtatcgaatgctacttacagattacctg
aacaacctctctcctgactcaaaagaatatgaggacacacaagctgccttggtgatcgtg
tccgaggtggcagaccaagctaatgacaatctgaaacagggggagaacttgctgcgtctg
gtccacatagagtacagtgtaaaaggcaagagggacctcctgaagcccggaaggatgttt
gtaaaagagggcacactcatgaaggtctcgaggaaaaacaggcagccacgacaccttttt
ctgatgaacgacataatgctgtacacgtacccccagcaggatgggaaatacaggctgaag
aacacactatctttgtctggaatgaaggtgagcaaacctgtacttgacaatgtgctgaac
tgtctacggattgaggtgtctgacatcaccattacactttctgccagttcggtcggagag
agggaggactggttccacacactaagtcgagctatagccgaccatgctgcaggactctgt
acatttgggggaccctgtaatgaggctcgtgaaaagctatggatggcgctgggtgaagct
gctcctgtattggtgccagtttctcatgtcatgatgtgcatgaactgtaccactgacttc
agcctcacactgagacgacaccactgcaatgcctgtggcaaggtggtgtgccgtgcttgc
tccagaaatagatacccactgaagtacctcaaagacagagtggtcaaagtgtgtgaccac
tgctatgctgagctcaggaaaagaggtggaagcgtgtcgggggcatgcggtagttccagc
cctcgtactcaccgggccagtcgtccactctctgctgtcttccagagcctgcagcccccg
agtttgtggaagagcaggaaaagcaccgcctctctcaatcaggtgtcgcttggtgtggag
ggctccaccatgagtggcagcctgcagcgcagaaagaagagcaagaggaagtggaagcgg
ctgtggttcctcctcaaagacaaggtgctctacaccttcacagcccgtgaggataaagtg
gcttcagagagtctacctctgcagggcttcactgtcaagctgactgagagaccagaggga
gaggaaagcagcaacgtgttccatctgtaccacaagaaaaccctctactataccttcagg
gcagatgaccaacacactgcacgcagatgggtaaatgccatggaggaggctaccgtttta
tag
DBGET
integrated database retrieval system
