Lates calcarifer (barramundi perch): 108885770
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Entry
108885770 CDS
T04895
Symbol
srfb
Name
(RefSeq) serum response factor b isoform X1
KO
K04378
serum response factor
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04010
MAPK signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108885770 (srfb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcf03000
]
108885770 (srfb)
Transcription factors [BR:
lcf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
MADS-box responders to external signals
108885770 (srfb)
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Gene cluster
GFIT
Motif
Pfam:
SRF-TF
Motif
Other DBs
NCBI-GeneID:
108885770
NCBI-ProteinID:
XP_018535731
UniProt:
A0A4W6CBI8
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Position
LG16_LG22:complement(2846072..2867146)
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AA seq
601 aa
AA seq
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MLPSQVGSAPSGNGSASGRGTTGHGSGVVGSGIRPVLVRAGQALPGVGESAGAAGRQGER
DAVGMLGANGPGGVRGTRPGNGTGVTPLQTAVQGNMVGLNAGVVLPHGARFDPDRECAPL
CSGSDNDSDSGDDDDPVGSLGDSRRGVKRERGEMEAAVTGQEVGVPPGGYGMVSGGVAGA
KPGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHV
YTFATRKLQPMITSETGKALIQTCLNSPDSPPRSDPSTDQRMSATGFEETDLTYQVSESE
SMGDTKDTLKPTFTVASLPGTTSSTQSTVPTTSTTMQVSSGPSFPITNYLAPVSASSNVS
ANGTVLKTTGASTGVMQLPGGFTFMPAGTPLPPGTPTIPLSQLQQHSLALQGQHGQALAT
APQPQQGQQAVFRFPAAVSLTGAGVPQQLQAIQVHPNTQSTSNDSSPEISHTSTNSTATV
SLPATIVTSSVPTSVAGHMMYPSPHTVMYASTPALADGGLAVLNAFSQGTSAMQVSHAQA
QDTGAVSQVFLTAPPGTVQIPVSAVQLHPMVIGQQSSGSSSSNLTELQVVNLDAAQNSKS
D
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgttaccgagccaggttggatctgcaccatctggaaacgggtcagcttcgggtaggggt
accacaggacacggttcgggggttgtcggcagcgggatccgtcccgttttggtcagagca
gggcaagctttaccgggggtcggcgagagtgccggtgctgccgggcgacagggggaaaga
gacgccgtcgggatgctgggggctaatggtccagggggtgtgagaggtacgagaccgggg
aacgggacaggggtgacccctctacagaccgctgtccagggaaacatggtggggttaaac
gcgggagttgtgttgccacacggagcacggttcgacccggacagagagtgtgctccgctg
tgcagcggctcggataacgactcggactccggagatgatgacgaccccgtgggttcactc
ggggacagcaggagaggggtgaagcgggagagaggggagatggaagctgcagttaccggg
caggaggtgggagtacctcccggaggttacggcatggtgtccggaggggtcgccggggca
aagccggggaagaagacacgtggtcgcgtaaagataaagatggaatttattgacaacaag
ttgagacgctacacgactttcagcaagaggaagacgggtattatgaaaaaggcctatgaa
ctctccaccctgacgggaacccaggttctgttgcttgtggccagtgaaaccggtcacgtt
tacacttttgccactcgcaaactccagccaatgatcacaagtgaaacaggcaaagccctg
atccagacatgcctcaactcaccagactcgccgccacgctctgacccctccacggaccag
cgcatgagtgccacaggctttgaggagacagacctcacctaccaggtgtctgagtcggag
agcatgggtgacacaaaggatacactgaagccgacgttcacggtagccagcctaccaggc
actaccagcagcacccagtccacagtacccaccacctccaccaccatgcaggtgagcagc
ggaccttcgtttcccatcaccaactacctggcgcccgtctcggccagcagcaacgtcagc
gccaacggtaccgtcctcaagaccaccggcgcctccacaggggtcatgcagctgcccggt
ggcttcactttcatgcctgcaggcactcctctcccccctggcacccccaccattcctctg
agccagctgcagcagcactccctggccctccaggggcagcatggtcaggccctggccacc
gccccgcagccacagcagggacagcaggctgtcttccgcttccctgctgctgtctccctc
acaggagcaggggttcctcagcagcttcaagctatccaggtccaccccaacacccagtcc
acctccaacgacagcagcccggagatctcccacacctccacaaactccaccgcaacggtg
agtctcccagcaaccattgtcacctcatcagtgccaacgtctgtggcgggtcacatgatg
tatcccagcccccacacagtaatgtacgcctccacgccggcgctggctgacgggggactg
gcggtgcttaacgccttctcccagggcacctcggccatgcaggtatcccacgcacaggcc
caagacacaggtgctgtctctcaggtgttcctcacagcacctccaggcacagtgcagatc
cctgtctcagcggtgcagctacacccaatggtgattggccagcagtcgagcggcagcagc
agcagtaacctgacggagcttcaggtggtcaacctggacgcagcacagaactcgaagagt
gactga
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