Lates calcarifer (barramundi perch): 108885883
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Entry
108885883 CDS
T04895
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108885883 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108885883 (cnot3a)
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108885883 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108885883 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
108885883
NCBI-ProteinID:
XP_018535893
UniProt:
A0AAJ7PQE7
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Position
LG15:complement(11070622..11079287)
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AA seq
912 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQRE
KEETGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIDELKRLIERHRFHI
RMLETILRMLDNDSVPVDAIQKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDIPAALVA
TSPSGQGNVEDEMYLHSSSTPTSTTSSSPIPPSPATCTAENSEDDKKRGRSTDSEVSQSP
VKNGTPSLLSSFSSSTTSGSSSSSSLVSMASVVGGIPPVPTSSSLIGSFSSAVQQHQHQP
AQQQQQSQPPNQPQQQQQQPPQTKPSVPSNNTPSPPSNPLLPASTAPSLLTPSTPSSSAP
NSQSQPTSGPTPASSLGLGLGLGLSKGGMTGTSSANQMPGLGLGGHPTPLNTMAGLLSGS
TPAPYAQAAASGGLGLSSTTQSSISVESSTSIPTSGSSGVTTNGAGTGLGLLGSSPAHSS
LSGSILGLVPGQSVAPGASQVPPSSVSTTSGVVGMMGGNGGNVGVVGGVGVNAAPARPPS
GLKQNGSTSYSAVVAESSTESALSTPSQSQSSQPSSLSSSTSQPMDNGPSLISSITLPPS
SPSPSFSDSTPGGGSLLNGPHSYTQASEGLKAPEPLSSLKAMAERAALGQGLDGEIPNLH
LTDRGRNDIFSGSSAAPGTPAAPQPSVSEVSIPPSLGVCPLGPTPLPKDQLYQQAMQESA
WTHMPHPSDSERIRQYLMRNPCPTLPFHHQIPPHHSDSIEFYQRLSTETLFFIFYYLEGT
KAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFT
FEYRYLEDRDLQ
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagaaaacttcaaggtgagatcgacagatgtttgaaaaaagtagctgaa
ggtgtagaacagtttgaagacatttggcaaaagctccacaatgcagccaacgcaaaccag
aaggaaaaatatgaggctgacctcaagaaagagattaaaaaactacagcgattgagagat
cagataaaaacatgggtggcctcaaacgagatcaaagacaaaaggcagctagttgagaac
cgcaaacttatagagacgcaaatggagcggttcaaggtggtggaacgtgaaacaaaaaca
aaagcctactctaaagaaggcttggggctcgctcagaaagtggatccagctcagagggaa
aaggaggaaacgggacagtggctaacaaatacgatagacactctaaatatgcaggtggat
cagtttgaaagtgaggtggaatctctctcagttcagacaagaaagaagaagggtgataag
gagaaacaagaccgtattgatgagctcaagcggttgattgagaggcatcgattccacatt
cgtatgttggagaccattttacgaatgctggacaatgactctgtgccggtggatgcgatc
cagaagatcaaggatgatgttgagtactacattgattcgtcccaagacccggactttgag
gagaacgagttcctgtatgatgacttggacctggaagacatccctgcagcattagttgca
acttctccgtcaggtcagggcaacgtggaagatgagatgtatctccactccagcagcact
cccacttccaccacctcctcctcacccatccctccatccccggccacttgcactgctgag
aactcagaggacgataagaaaaggggacgatcgacagacagtgaagttagtcagtctcct
gtgaagaacggcaccccatccttgctatcttccttctcttcctccaccacctctgggtcc
tcctcatcctcctccctcgtgtccatggcgagtgttgttggaggcattcctccggtcccc
acgagcagcagtctaataggaagtttcagcagtgcagtgcagcaacatcagcatcaacct
gcacaacagcagcaacaatctcagccaccaaaccaaccacaacagcaacagcagcagcca
cctcaaacaaaaccttctgtcccctcaaacaacacccccagcccgcccagcaacccccta
ctcccagcctccactgccccctctctcctcacacccagcacacccagttcatcggctccc
aactctcagtctcagcccacatctgggcccaccccagcatccagtttgggactcgggctg
gggctgggattgagcaaaggtggcatgacggggactagcagtgccaatcaaatgcctggt
ttaggcctgggtggccaccccactcctcttaacacaatggcagggctcctttcgggctcc
acacctgccccttacgctcaggcagcagcatcaggaggcttgggtttgagcagcaccacg
cagtccagcatttcagtggagagcagcacttccatccccacctctggctccagtggagtc
actaccaacggggcggggacagggctcggtttactaggttccagcccggctcacagttct
ctgagcgggagtattctgggtctggttcctgggcaaagcgtggcccccggtgcctcgcag
gtgcccccgagttctgtgagcactacctctggtgtagttggcatgatgggaggaaatgga
gggaacgtcggcgtggttggaggagtaggggtgaatgctgctcctgcaagaccaccgagt
ggactgaagcaaaatggaagcacaagttacagtgctgtagtagcagagagctccacagaa
tcagctctaagcacaccgagccagtcacaaagcagccaaccctcatctctcagttcctca
accagtcagcctatggacaatggtcccagtttaatcagctccatcaccctgcctcccagc
tctccgtccccctcattctcagacagcacacctggaggagggagtcttctcaacgggccc
cactcctacacacaggcatctgagggcctcaaggctcctgagcctctcagttctctgaag
gcgatggctgagagagcagcgctgggacagggcctggatggagagattccaaaccttcac
ctgacagacagaggtcggaacgacatcttctctggttcatctgcggcgcccggcacacct
gccgcccctcagccgtccgtgtcggaagtcagcattcccccctcgctcggggtctgtcca
ctgggccccacacctctccccaaagaccagctgtaccagcaggccatgcaggagtccgcc
tggacacacatgccacacccctctgactctgagaggatcaggcaatacttgatgaggaac
ccgtgtcccaccttgcccttccatcatcaaataccaccgcaccactctgactccatagag
ttttaccagagactgtccacagaaactctctttttcatcttctactacctggagggcacc
aaggctcagtatttgtctgccaaggctctgaagaagcagtcatggaggtttcacaccaag
tacatgatgtggttccagaggcacgaggagcccaagacgatcactgacgagtttgaacag
ggcacttacatttactttgactatgagaaatggggccagaggaagaaggaggggttcacc
ttcgagtacaggtacctcgaagacagagacctgcagtga
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