Lates calcarifer (barramundi perch): 108885921
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Entry
108885921 CDS
T04895
Symbol
rnf115a
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF115
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108885921 (rnf115a)
04121 Ubiquitin system [BR:
lcf04121
]
108885921 (rnf115a)
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108885921 (rnf115a)
Membrane trafficking [BR:
lcf04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
108885921 (rnf115a)
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108885921 (rnf115a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4
zf-rbx1
Zn_ribbon_19
zf-RING_5
zf-Nse
zf-ANAPC11
C1_2
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
108885921
NCBI-ProteinID:
XP_018535969
UniProt:
A0A4W6FRD4
A0AAJ7V4T4
LinkDB
All DBs
Position
LG15:11553148..11560740
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AA seq
340 aa
AA seq
DB search
MPGWRRTAVLGLWRTDVSVCAGLGKMAEAAAVPPHRFFCHCCKGEVNPKLPEYICPRCDS
GFIEEVTEDSSLLEGGANGIDDTATQFAELWHLLLLERPFTTDSDTPDSEPRLPGGRLGG
LSDLGGLGGGPMGGSVPAGLGGPMGGLLGAGEHWGPGRPPRLHSQRRYRSRGSSRPDRSP
AVEGIVQQFLAGLFANSGVPGSPPLSWTGMLHSNPGDYAWGQGGLDAVITQLLGQLENTG
PPPAEKEKISSLPTVSISQEQADCCMECPVCKEDFAVGEPVRQLPCNHFFHSDCIVPWLE
MHDTCPVCRKSLNGEDSSSQPPSESPSLSMDPRTQERWSF
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgccgggctggaggcggacagctgtcctcggtttgtggaggaccgacgtcagtgtttgt
gctggtctggggaagatggcggaggctgcggctgttcccccgcatcgatttttctgtcac
tgttgtaaaggagaagtaaaccccaaactcccggagtatatctgcccaagatgtgattca
gggttcatagaggaagtaacagaagactccagtctcctagagggtggcgctaacgggata
gatgacacagccacacagtttgcagagctatggcacctgttgttactggaacggccattt
acaacagacagcgacacccctgactcagaacctcggctccctggaggacgcctgggaggt
ctcagtgacctgggggggttgggagggggaccaatgggggggtcagtcccagcaggccta
gggggacctatggggggtctactaggagctggggaacactggggaccagggcgcccacct
cgcctgcacagccagaggagatatcggtccagaggcagcagcaggccagaccgctcaccc
gctgtggaagggatcgtgcaacagtttcttgctggcctctttgccaattctggagtccct
ggctcacctccgctctcctggacggggatgctgcactccaacccaggagattacgcctgg
ggacagggagggttagacgctgtgataacacagttactaggtcagctggaaaacacagga
cctcctccagcagagaaagagaagatctcttctctcccaactgtcagtatctctcaggaa
caagcagactgctgtatggaatgtccggtgtgcaaagaggactttgcagttggagagcca
gtcagacagctaccctgtaaccacttctttcattcagactgtatagtaccatggctggaa
atgcatgacacatgtccagtgtgtaggaagagtttgaacggagaagacagcagcagccag
cccccatcagagtccccctccctctccatggaccctcgcacacaggagagatggtccttc
tga
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