Lates calcarifer (barramundi perch): 108885925
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Entry
108885925 CDS
T04895
Name
(RefSeq) uncharacterized protein LOC108885925 isoform X1
KO
K23283
RUN and SH3 domain-containing protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108885925
Membrane trafficking [BR:
lcf04131
]
SNARE
SNARE associated proteins
Others
108885925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RUN
SH3_1
SH3_2
SH3_9
Motif
Other DBs
NCBI-GeneID:
108885925
NCBI-ProteinID:
XP_018535975
UniProt:
A0AAJ7PQJ9
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All DBs
Position
LG15:complement(11590952..11607081)
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AA seq
1924 aa
AA seq
DB search
MQSSSCSSQPPKPRRFDVSRRTNTLAGPKSHGPGFQREDKNMNTITTSSPRRATKGPTAP
TRTRVGVQPRPPVSQSRFASQKQGSTISKSAKPKPKNARTSAAAKIAPAAAPPPPLPSVL
PLDPNCNEPSLPCLCCDGRSPQDNNSMFNHNHNNNNTISLRQQLQLPPPPAPLPQRQDGT
GAKDQPQPPSQAQAQLEPSACPAANLVNGDKNADESSDLDNKKHEKVEEEDDEEESSGDI
DIDDDEVEADNDDDDDDDDTLVPSCCDCPPSLLEFSLSSSTSSSSTSISSCSDLESDCAD
QSASICSSHDQENLSVALSPKDHSLPQAPECQPPTRSPPSLPLSCNPFSLTSHSPIPPCS
PDEGYPSALDSPSPDYLGVKGDSEVTKLGLLDFLESVGEFGKMERFSQVIQVARWDLEGE
QHWDVLRDRLDHLDRLEKVNREVKLAYIARLHEKGFDLGDLEEQDLSDVMDEMGNIDIPW
KLYKNRKGTMGESQEFSDAGVDLTAPSDCDDPLVPDSLTPSPVEPPPRPPKPPARHASVS
PYLHTYINISRETTSMAVSTSPTLSTFSPNSSSPTFTTFRCEKPLPPSPPSVPPLPASKP
VPYLTLYTTPSPPPSIPTPTPPIPPPRRRHLARKEAQRLAALQAEQEKTPLSLPPPTTRP
PPLPPPPVVSVSSSSPPAIPPPPALPPPPSFHALDVEIRKLLMLAGLTQAELLKLSPELG
VCVGGLEDEGDGDNLLPSRSLELHEFRLKDREEEKECDTEFMDRDGWSSRGKLDADRRVD
ITEEGKKKEESKDTQRTTSFTEMARRRKRNSGLTSDHYYNTGLSNTHENKAKNMSFDTFH
YPTELPDSPPPPPPPRPLPPIPPSLPPLKVSTLPANSAQPERFDWLIAFTPDCDAPPQPP
PLEMRKSHTETQKKPSSSGSSPGSAPKVTTFKELRFRNKSASPPTKVITEPEPDPTVVTP
DPDILYNLRWRREKAGSDGSQWEYTSQAQALFMQPPPALTSMAALKEMLQRADEEGGQPE
LCPSQKIGCSVSDSSLWTMGKEWEDQEVKKEEKEEKKEEKEEEVEVRGRADGGRNFQSRT
TAVSSPPLSLAQSSQPYFLHSALPSYRPGYFNSQPLADPRPHSHVGRESTGKHCNAQWTP
AASSACIHRDDSSTDISSGFNYDSLADCVVDSPHDYGNIFKQNTHSEYQSISDSKTNERE
FASDSICNFDSLYCTDSEKKNDTHTKPDTPVSGTTEAPGCSTPYKNIDVMMTYSNSISAK
NSLYSEKHTHSHADHNSNKARTNKELPPLPTYYLYHPKNCPLHRGAPPRLSPIGALSPPQ
RPGAPPPGTAGSSLSSPLFPRSHTLPALAAPLYYPNLYPPVPPRAPPLPPKLYQAPPLSR
VATVRSVSFAGSVQRGETSWMGEDVKFPMRGLGLSSLCLQEKKALVGAVSVAVEAILAQF
SSSRTIVQKSLSVNKALSGDSTINPSLGRLVLQCLCPALHSLLTDGLKPHQSDLIAGRRP
NSAWGLVQASTRPGPKTQILYNLQVRVGGLPQLRQSKHRFNAFLLGLLNTKFLDFWLSHL
QSCNDVLETYYHPTSFMRLSLTTCQPLFEELLLVLQPLSLLTFNLDLLFQHHHLEPDGHS
PEIPSPPCQDAGFQLSSSGSQSKNTGSRYIESLSEVDFESPEHQAAKGNPSPSANPKNGG
LGVSTHVDAAPAKASVTLGQTSPQLLWVQEKEIGELPPPNIEEDSLAQQAGQVIQQGWGA
MIRWGGRLSQNLADLSLSAGKKEEMKTDLPDLQTQAGSDYAPVSSGAQVPWGLGRLFGAS
KSPNSPTSHTPPTRRPSQWLAPGVTALTRIVSSSSTPMMRRAPEPQVESEPESEKEINTL
EMKDKPRPLRSVRTLCNHTGTGSELSFCKGEELVVLGGVDQDWIRCRQGDKEGLVPIGYT
SLIM
NT seq
5775 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcctctagctgctcctctcagcctccaaagccacggcgttttgacgtcagccgg
cggaccaataccttagctggaccaaagtctcatggccctggttttcagagggaggataaa
aacatgaacacaatcaccacgtcctccccacgtcgggctaccaaaggccccactgcaccc
accaggaccagggtgggtgtgcagcctcgacctccagtaagccagtccaggtttgcctct
caaaaacagggttccactatctccaaatcagctaaacccaaacccaagaatgctcgtaca
tcggcggcagccaaaattgcacctgcagccgctcctcctcctccgcttccatctgttctc
cctcttgacccaaattgcaacgagccgagccttccatgtctgtgctgtgacggccgctcc
ccacaggacaacaacagtatgttcaaccataaccacaacaacaacaacaccatctctctc
agacagcagctacagcttcctcctcctccggccccgttgcctcagagacaagatgggaca
ggggccaaggaccaacctcaacctccatcacaagcacaggcccagctggagccctctgcc
tgccccgctgccaatctggtaaatggagacaagaatgctgatgaaagctctgatctggac
aacaagaaacacgaaaaggtagaggaagaagatgacgaagaagagagcagtggagatatt
gatattgatgatgatgaggtggaagctgacaatgacgacgatgacgatgatgatgacacc
ctggtcccctcgtgctgtgactgtcccccgtccctcctggagttctccctctcctcttct
acctcctcctcctccacttccatcagctcctgctctgatctggagtctgactgtgcagat
caatccgcctccatctgctcctctcacgaccaagagaatctctccgttgctctgtccccc
aaagaccactctcttccacaagcccccgaatgccagcctcccacacgttcacccccatcc
cttcctcttagctgcaatcccttctccttaacatcacattccccgattcccccttgctcc
ccagatgaaggctacccctctgccctggactctccttctcctgattatttaggagtcaag
ggtgattctgaggtcaccaaactaggtttgcttgattttctagaatcagtgggcgagttt
gggaaaatggagcgcttcagtcaggtgatccaagtggctcgttgggatctggaaggggaa
cagcactgggatgttctaagggatcggttagatcacctggatcgcttggagaaagtgaac
agggaggtaaaactggcctacattgccagactccatgagaaagggtttgacctcggagat
ctagaggagcaggacctgtcagatgtcatggatgaaatgggcaacattgacattccctgg
aagttgtataaaaaccgcaagggaacaatgggagagtctcaggagttttcggacgctggg
gtcgacctcactgctccatcagactgcgacgatcctctcgttccagattccctcacccct
tcccctgtcgagccaccacccagaccccccaaacctccggcgcgtcacgccagtgtgagc
ccttacctccacacctacatcaatatcagcagggagaccacctccatggctgtctccacc
tctcctacattatccactttctccccaaactcgtcatcccccacattcaccacttttagg
tgtgagaaacccctacctccatctccaccatcagtccctcctctgcctgcctctaaacca
gttccttatctcaccctctacaccactccttctccacctccatctatccccaccccgact
cctcccatccctccccctcggaggcgccaccttgccaggaaggaggcacagcggctcgct
gctcttcaagccgaacaggaaaagacccccctgtcactcccacctcctaccacgcggcct
ccacctcttcctcccccacctgttgtctcagtctcctcctcatctccccctgccatccca
cctccaccagccctgcctcctccgccatccttccacgcactggatgtcgagattcggaag
ttactgatgcttgcaggattgacccaagctgagctcctcaaactgagcccagagcttggt
gtctgcgtcggagggttagaggatgagggagatggagataatcttcttccatctagatct
ttggagttgcatgagttcagactcaaggacagggaggaggagaaggaatgtgatacggaa
ttcatggacagagatggatggagcagcagaggcaaactggatgcagatcgaagagtagat
atcactgaagaaggcaaaaagaaagaggagagcaaagacacacaaagaaccacctcattc
actgagatggcaagaagaaggaagaggaacagtggtctgacctctgatcattactacaac
accggtcttagcaatacacatgaaaataaagcaaagaacatgagctttgacactttccat
tatcctactgagttaccagattcacctccacctccacctcctcctcgccccttaccccca
atcccgccatctttgccacccctcaaagtcagcactctccctgccaactctgcacaacct
gagcgatttgattggctcatagcattcacacccgattgtgacgccccaccgcagcctccg
cccctggaaatgagaaaatctcacactgaaacccaaaagaagcccagctcgtcagggtca
tcgccggggtcagctccaaaggtcacaaccttcaaagagctgcgtttccgcaacaagagc
gcctccccaccaacgaaggtgatcaccgaaccagagcccgacccgacggttgtcactccg
gatccagatatattgtacaacctgaggtggagaagagaaaaagcaggcagtgatggcagc
caatgggaatacacctctcaggctcaggccctgttcatgcagccgccgccggctctcacc
tcaatggctgctctgaaggaaatgctccagagagccgacgaggagggcggacaaccagag
ctgtgcccatcacagaagattggctgctcagtcagtgacagcagcctgtggaccatgggc
aaagagtgggaggaccaggaagttaagaaggaagaaaaagaggagaagaaggaagaaaaa
gaggaggaggtggaggtgagaggacgagccgacggaggaaggaattttcaatcaagaact
acagcagtttcctcacccccactctccctcgcccagtcttcccaaccctacttcctccac
tctgccctcccttcctatcgcccaggctactttaactcccagccccttgcagatcccagg
ccccacagccatgtagggagggagtccacaggcaaacactgcaacgcacagtggacccct
gctgctagctcagcttgtatccacagagatgattccagcactgatataagctctgggttt
aactatgattccctggctgattgtgttgtagactctcctcatgattatgggaatatcttt
aagcaaaacacacactcagaataccaatctatcagcgattccaaaaccaatgagagggag
tttgcatctgactctatttgtaattttgactcgctctactgcactgactcagagaagaag
aatgacacacacactaagccagatacacctgttagcggcaccactgaggcaccaggttgc
agcactccatataagaacatagacgtcatgatgacatattcaaacagtatcagtgctaaa
aattctctgtattcagaaaagcacacacactcgcacgcagaccacaacagcaacaaggcc
aggacaaacaaagaacttcctcccctccccacctattacctgtaccaccctaagaactgc
cctcttcacaggggcgcccctcctcgcctctcccctattggagccctctcccctccccag
cgccccggagcaccccctccaggcacagcaggctccagcctcagctccccgcttttcccc
cgctcacacaccttgcctgccctcgctgctcccctctactatccgaacctctaccctcct
gttccgcccagggcgccccccctacccccaaaactctaccaggctcctccgctgtcacgc
gtggcgactgttcgcagtgtgtcattcgctggctctgttcagaggggagaaacgtcctgg
atgggcgaagatgtgaagtttccgatgagaggtcttggcctgtcctctctgtgcctgcag
gagaagaaagctctggtgggtgcggtcagtgtagcggtagaagccattttggcccagttc
agttcttctcggactatagttcagaagtctctctcagttaacaaggccttatcgggagac
agcaccataaatccatctctgggccgtctggtgctgcagtgcctctgccccgccctgcac
agcttgctgaccgatggattgaaaccccaccagagtgacctgattgcaggcaggaggcca
aactctgcctggggcctggtccaagcgtcaaccaggccaggtcctaaaacacaaatcttg
tacaacctacaagttcgagttggggggctgccccagctcagacagagcaaacacaggttc
aatgcattcctccttggcctactgaataccaagtttcttgatttctggctgtctcacctt
cagtcttgcaatgatgtgttggagacatactaccatcccacttcctttatgcgtctgtcc
ctgaccacctgccagcctctgtttgaggagctgctccttgtgctgcagcctctcagcctg
ctgaccttcaaccttgacttgctcttccagcaccaccacttagagccagacggtcacagc
ccagagatccccagcccgccctgtcaagatgcggggttccagctgtcatcaagtggttcc
caatccaaaaacacaggcagcagatatattgaaagcctctcagaggtagattttgagagc
ccagaacatcaggcagctaaaggaaacccttcaccatcagctaatccaaagaacggagga
ttgggggtgtcgacacatgtcgatgctgcacccgcaaaggcttcagtcactctcggtcag
acaagtcctcagctgctgtgggtgcaggagaaggaaattggagagttacctccccctaac
atcgaggaggacagtcttgcccagcaggcaggacaggtgatccagcaggggtggggggct
atgatacgctggggaggccgactgagccagaaccttgctgatctgagcctgtctgcaggg
aagaaggaggaaatgaaaacagatttgccggatctccagacccaggcaggaagtgactac
gctccggtcagcagtggtgctcaggttccctggggtctgggtcggctgtttggagcctct
aaaagccccaacagcccaacgagtcacacaccaccaaccaggcgtccctctcagtggttg
gctcctggtgtcacagcactgacccgaattgtgagcagcagctccaccccgatgatgagg
agggccccggagcctcaggtagaaagtgagccagagtcagagaaagagatcaacacactg
gagatgaaggacaaacccagaccactcaggtcagtacgaacgctgtgcaaccacactgga
acaggttcagagctcagcttctgcaaaggggaggaactcgtggtgttagggggcgtcgat
caagactggattcgctgtcgtcagggagacaaagaggggctggtacctattggctacaca
tccctcatcatgtga
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