Lates calcarifer (barramundi perch): 108886033
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Entry
108886033 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: chondroitin sulfate proteoglycan 4-like
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lcf00535
]
108886033
04091 Lectins [BR:
lcf04091
]
108886033
Proteoglycans [BR:
lcf00535
]
Cell surface proteoglycans
Others
108886033
Lectins [BR:
lcf04091
]
C-Type lectins
Others
108886033
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Cadherin_4
DUF6249
Motif
Other DBs
NCBI-GeneID:
108886033
NCBI-ProteinID:
XP_050928789
UniProt:
A0AAJ8BBE8
LinkDB
All DBs
Position
LG9:complement(6962492..6998906)
Genome browser
AA seq
2448 aa
AA seq
DB search
MELTHNRHNVTMTVDRNSHTSLRMPGPDLELRVEDGLFVGGAAGLNRPYLLNITGFRGCV
DEVVFNEHNLLSSLRPYSGYKSVHEVSMGCSPQFSATEEDPVSFFSSKAFISLPPWEVPQ
EGVFECELHPSAKDKDGVVLYSSGNQGEFVAIEIIDGHLVATIGNGEGIKTELRSLTQVY
SNYTWYPIQLHLLPYSIQLKVDKELIKADLSKELQVIQLKGPLLLGGLDEEAREEARLAG
LLSALSGGGGGSFKGCLREIRVNSQRMGLPHAVITKDITVGCRTGQALVMVATTRPTGSP
EFDVTISPQPIIKNKKNPNFLFLRKLEVAEGGRAPLEPKHMKVNLDFRKLGIHPAQLMFR
IEEQPVHGQLRLDLSPDPDGLLDMGQERIITIGSDEKDRTFSMLDLWQGRVMYVHSGSED
QNDFFMFSVFSSNKKELPVFLKGNRLHRFDISISPVNDAPVLSLPEGNLFTLLEKSKRQL
TTDVLRVSDPDSNPAELVFSSLANLNTEAGHLEHQDYPSRAINLFSLQDLEEGKIYFVHT
GVSTSRLPLRVSDGQKLSNTVVLRIMAVALEHKLMNNTGLEVDQGEASIITTSHLAVQVN
VADQAAEIRYDVTELPQYGDLQRLHSSGDWKLTTSFSQKLLEKERIRYLSTYRGLQAQSN
ITDQFKCKISISSLVTEEVIFPIVVRWIHFKVTRSKMEVNGVQSAVVTPEDLHVVSKGVK
LNESNLHFRLLTVPKKGRLFLDSKVIQKNSNFSQKNITDGLLKYELLSRLQDDTRDTFSF
QVFSSHANSTSYDFRINIKSESTAITVVNKGLSVLEGGSKVITKDILFTHTASNREVQYS
IMVSPKYGQIRKVNLSNSTSINDNIAIFTNQDITEERIMYVHDDSETKQDSFTFQIMVYK
PHKHTGKKEDRNTAEHTFNISVQLVNDQRPVRVIDKVFHVARDGQRLVTLNDLRFRDDDS
DFEDSWLVYTRRGIPMGELVLASNPSHRLYEFTQRDLKQKKVLFLHRGVSFGRFVLFVSD
GKHYVSTLLEVMAQDPYLQVENNTGIMVQRGGFTTLTSANLSIFSNLDIRDPQEVTFEVF
LPPKHGVLCFDDGDHDTVKEADAISIFTQRDLVAGRLAYHHDGSHELSDGFNVTARAREE
STERRPDRGRREVHLDIGVLVKIYLESHQRPPTVISNRPVVVAEGQNASISREHLEVVHE
DSQPSEIIFTVQNPPTLGFLQRISPISDDGEPQYLYQGIREQTASFTQDNLNQGLIVYHQ
RAAGSTNDSVLLEATNGVTKVGPIRLEIDIIPILLPLQVSDLTLDEGSSLPLTPDIIKVA
NHHFSGMNFLYQVIIPPRNGHLEHSRIPGMPITAFTHTEVEREYISYIHDGSDTQRDNFT
IVANQTEIRKHSLPCTVHIRITPVNDETPVVTANRGLKVWVGSVTEITTNDLSAEDSDTP
SRGLSFVVTPPSNGHLALKSAPSRHILNFTQSHIQSGQLVFVHSGALSGGFHFQVNDGVN
FAPRQIFSTTAHSLVLTLQRNHPMEVYPGSVTPITVQELQVVTNDVSNIRRKHSVLFALT
APPKLGRLVRRMPDNSTREISTFTQSMVNDGVILYDQNKPESVGWSAADSFSFTVSSPPA
FLPPHTFTILISYQANEHHDNTQHKTRLLNNAGAVVAEGGRVIIDRSKLDASNLLGKVPQ
HHRKDHDILYRVITLPRHGTLAIRGHNLTRDQPGFSQTTLNKFGITYIHDDSETTTDSFT
FRAWVAPMDLSSASSSPSLSAFPSDSSSSPSPIPPLSSFSSADTASRRRAKDRLAVTEMF
NITVTPVNDQPPLIRSRARSMKVVVGERVVLGPDSLQVEDHDTPPEELHYLVISKPNNGY
LMLGERPEPVTSFTQYDVNHGRLHFIQQGEPLTGVFYFNVTDGHHRPLYKLFSLEVIKPS
VSLVNNTGLSLVQGKTAVVLTTNQLAAQTNGRSKANIIYMVATHPRHGRIAINDQEVMTF
RHEDLQSGRVVYHMTDLSESEDIFQISVSASSPGVDYGNVTAQTVNVTVRPLVYLREPVR
VPSGIAVKLGKAMIDASELARLSRVDPVFEVLSPPKHGKLVKMTYDPNRASEVLKSFTFR
DVVQGRVAIEETLSDSDNQLNDNKSALTTAQGHTPARPLNDSFIFLVKAGNVQPAKGELH
FTILPHHQMHHGPTGLNKADGASREHTTTRLPTHNKTTTGGGRGGGRGGSTTHGGGEMGL
PPHILSPKTHNRTQHKLRPHGRWGNHTRGGSHGGRSGSGAEGAGGGHSHPLQPHPPPFSD
KHGPVNPPDIHPVHVEVLPRPASDPLLIILPLLACLLLIIILMVLILVFRHRKEKQRLRL
IQELAAVTLPAERSPYLGQPERSMAMPSVVVTPLGPASCPTSPKVSISSRRRSLAPGMTF
WGPFEADGADGNIRGGNNNERENITAGFKTSEGSRSPAPSLKDNQYWV
NT seq
7347 nt
NT seq
+upstream
nt +downstream
nt
atggagctgacccacaaccgccataatgtcaccatgactgtggaccgaaattcccacacc
agcctccgtatgccaggaccagatctcgaactcagagtggaggacggtctctttgttggt
ggagcagctggtctgaaccgcccgtaccttctcaacattaccggttttagaggttgtgtg
gatgaagttgtgtttaatgaacataacctgctgtccagcctaaggccgtattctgggtac
aagagcgtccacgaggtatctatgggctgcagtccgcagttttctgcgacagaagaagat
cctgtcagttttttcagctccaaagccttcatctcactcccaccatgggaggtgccacag
gagggagtttttgaatgtgaacttcacccctctgcaaaagacaaagatggtgtggttctg
tatagctctggaaaccagggagagtttgttgccatagagatcatagatggtcatctggta
gcaacaataggaaatggagagggaattaaaactgagctccgttctctgacacaagtctac
agtaactacacctggtaccccatccagctgcacctgctaccctacagcatccagttgaag
gtagacaaggagttaatcaaggcagacctgagtaaggagctccaagtcatccagctaaaa
gggcctctcctcctgggagggctggacgaagaagctcgggaagaggcacggctggctggg
ttgctctctgccttgtcaggaggaggaggaggctcctttaaaggctgcctccgagaaatt
agggtgaacagtcaaagaatgggcctccctcatgctgtcatcaccaaagacatcactgtg
ggctgtaggacagggcaagcccttgtgatggtggccacaaccagaccaacaggcagtcct
gagtttgatgttacaatctctcctcaaccaattatcaaaaataagaagaaccctaacttt
ttgtttctgagaaagctagaggtagcagaaggaggccgggcgccactggagcccaaacac
atgaaggtgaatctggattttcgtaagctgggcatccatcctgcccagttaatgttccgc
attgaggagcagcctgttcatggccagctccggctggacctcagtccagaccctgatggg
ttgctggacatggggcaagagaggatcatcacaataggaagcgacgagaaggatcggact
ttcagcatgctcgacctgtggcagggccgggtgatgtacgttcacagtgggtcagaggac
cagaatgacttcttcatgttttcagtcttctccagcaataagaaggagcttcctgtgttt
ctgaagggcaaccgtctgcaccggttcgatatcagcatcagtcctgttaatgatgcgcct
gtgctcagcctcccagagggaaacctttttactttgctggagaaatccaaacgacagctg
actacagatgtgctgagagtgtcagaccctgacagcaatcctgcagagctggtgttcagc
tcccttgcaaacctcaacactgaggctggacaccttgagcaccaggattaccccagcagg
gccattaacttgttctccctacaagatctggaggaaggtaagatctactttgtccacact
ggggtctccacatccaggctgccactcagggtcagcgatgggcagaagttaagcaacaca
gtagttttgcggatcatggcagtggcactcgaacacaaactgatgaataacacaggatta
gaggtggaccaaggcgaggcttccatcatcaccaccagtcatcttgcagtacaagtaaat
gtggctgatcaagcggcagaaatccgatatgatgtgacagagttgccacagtatggtgac
ctccagcggttgcactcaagtggagactggaaactgacaacctcgttctctcagaaactt
ctagaaaaagaacggatccgatacctcagcacgtaccgtggccttcaggctcagagcaac
atcaccgatcagttcaaatgtaaaatcagtatcagttccctagttactgaagaggttatt
ttccccattgtggtacgctggatccacttcaaagtcacacgaagcaagatggaggtcaat
ggtgttcagtcagctgttgtcactcctgaggacctccacgtagtttcaaagggtgtcaaa
ctaaatgagagcaatctccacttcaggctccttacagtaccaaagaaaggtcggctattc
ctcgacagcaaagtcatacaaaagaactcaaacttcagccagaagaatatcacagatggt
ctgctgaagtacgagctgctcagcaggctacaggatgacacaagagacacgttcagcttt
caggtcttttcatcacacgccaactcaacaagttacgatttcagaatcaacatcaaatcc
gagtcaacagccatcactgttgttaacaaaggcctttcagtactggaaggagggagtaaa
gtcattaccaaagacatcctgttcactcacacggctagtaaccgggaggtccagtatagt
atcatggtgagccccaagtatggccagataagaaaggtcaatctctccaactcaacgtcc
attaacgacaacattgcgatctttacaaatcaggatatcacggaggagaggatcatgtac
gttcacgatgacagtgagacaaagcaggactcttttacatttcaaatcatggtttataaa
ccgcataaacacactggcaagaaggaggatagaaacacggccgaacacacctttaatatt
tctgtgcagcttgtcaatgatcagagacctgtcagggtcattgataaagttttccacgta
gctcgcgatggccagaggttggtgacgctgaatgaccttcgcttccgggacgatgattct
gatttcgaagacagctggttggtgtacacaaggagggggatccccatgggagagctggtg
ctggccagcaatcccagtcacaggctgtatgagttcacacaacgggacctcaagcagaaa
aaggtgttgtttctccacagaggagtgagttttggacgctttgtgctttttgtatcagat
gggaaacattatgtttccacactactggaggtgatggcccaggatccttatctgcaggtg
gagaacaacacaggcatcatggtccagcgaggtgggttcacaaccctgacctccgctaac
ctcagcatcttcagtaaccttgacatccgagacccacaggaagtgacattcgaggtcttc
ctgccacctaagcatggtgtcctctgcttcgatgacggggatcatgacacggtgaaagaa
gcagatgcaatttcaatattcacccagcgggatctggtggcaggacgcctggcatatcat
cacgatggcagccatgaattgtcagatgggttcaatgtgacagccagagcgagggaggag
agcacagagaggcgaccggacagagggaggagggaagtgcatctggacatcggagtgctg
gtgaaaatctatttggagagtcatcagaggccgccaacagtcataagtaatcgtccagtg
gtggtggcggagggacagaatgcctctataagtagggaacatttagaggtggtccatgaa
gacagccagccatcagagataatttttactgttcaaaatcctcccactctgggctttctt
cagaggatctcccccatcagtgacgatggagaaccgcagtacctgtatcagggcatcaga
gagcagacagcctccttcacccaggacaacctgaaccagggattgatcgtctaccatcag
cgggccgcaggaagcaccaacgactctgttctattggaggcaaccaatggggtcacaaag
gtcggacctatcaggctggagatcgatatcattcctatcctgctgccactacaggtgtct
gacttgacccttgatgaagggtcgtccctgccgctgacccctgacatcatcaaggtcgcc
aatcatcacttctcgggcatgaacttcctgtatcaagtcatcattccaccgcgaaacgga
cacttggagcacagccggataccagggatgcccatcactgctttcacacacacagaggtg
gaacgtgagtatatctcatatatccacgatggcagcgacacacagagagacaacttcacc
atcgtggccaatcagacagaaatcaggaagcacagtttaccctgcaccgttcacatccgt
atcacaccggtcaatgatgagactcctgtcgtcacagccaaccggggtctgaaggtgtgg
gtgggttcggtgacagaaatcacaacaaatgatcttagtgcagaggactctgacactccg
tccaggggcttgagtttcgtcgtcacaccacccagcaatggccacctggctctgaagagt
gccccctccagacacatcctgaacttcacccagagtcacatacaaagtggacagctggtg
tttgtgcacagtggtgcgttgtcaggtggttttcacttccaggtgaacgatggcgttaac
tttgccccccgtcagatcttcagcacgactgcccactctctggtcctcactctgcagaga
aaccatccaatggaggtctacccaggctctgtgacaccaatcactgtgcaggagcttcaa
gtggtaaccaatgacgtcagcaatatcagaagaaaacactctgtgctctttgcactgact
gctcctcctaaactcggccgcctggtccgccgtatgccggacaactctacacgtgaaatc
tccacattcacacaaagcatggtgaatgatggagttatcttgtatgatcagaacaagcca
gagtcagtggggtggtcggctgcagactctttctccttcactgtgtcctctcctcctgct
ttccttcctccacacaccttcaccatcttaatctcctaccaggccaacgaacatcatgac
aacactcaacacaagaccagactactgaacaacgcaggtgctgtggtggcagagggaggc
agggttattattgacaggtctaaactcgatgcctctaatctcctggggaaggttccacag
caccaccggaaagaccacgacatcctgtaccgtgtgattactctgccacgtcatggaact
ctggcaatacgaggacataatctcaccagagaccaaccaggtttctcacagaccaccctg
aacaagtttggcatcacatacatccacgacgactctgagacaacgaccgacagcttcacc
ttccgggcttgggtggctcccatggatctctcatccgcttcctcctcaccgtccttgtct
gcttttccctccgattcctcctcttccccttcccccattccccctctatcctccttctcg
tcagcagacacagcttctcgacgccgagccaaggacagactggcggtgacagagatgttc
aacatcacagtgacgccggtcaacgaccagccgccactcatcaggagcagagcccggagc
atgaaggtggtggtcggggagagagttgtacttggcccagacagtctgcaggttgaagat
catgacacccctccagaggagctgcactaccttgtgatcagtaagcccaacaacggctac
ctgatgctgggggaaagacctgagccggtgacctctttcacccagtatgatgtcaaccac
ggccggctgcactttatacaacagggtgagcccttgacaggagttttctacttcaatgta
accgacggtcatcaccgtcccctctacaaactgtttagtttagaggtgattaagccttct
gtttccctggtgaacaacactggcttgtcgttggttcaaggcaagaccgctgtggtcctg
acaaccaatcagctggcagctcagaccaacggtcgcagcaaggccaacatcatctacatg
gtcgccacacacccccgccacggacgcatcgctattaacgaccaggaggtcatgaccttc
cgccacgaggacctgcagtctggtcgtgttgtctatcacatgactgatctcagcgaatca
gaagacatcttccaaatctctgtgtcagcctcttcgccgggggttgattatggaaatgtg
acggcacagacagtgaacgtaactgtgcggcctctggtctacctgagggagccggtcaga
gtgcccagtggtatcgctgtgaaactggggaaagccatgattgatgcttctgagctggcg
agactcagccgagtcgacccggtctttgaggttctgtctccaccgaaacatggaaaacta
gtcaagatgacttatgaccctaaccgagcatcagaggtcctgaagtcatttacattcaga
gatgtggttcaaggccgagtcgccatcgaggagactctcagtgacagcgacaaccagctc
aatgacaacaaatcggctctcacaacagctcaaggccacactccggccagacctctcaat
gattctttcatcttcctggtgaaggctggaaacgtccaaccagcaaagggtgagcttcac
ttcaccatcttaccccaccaccagatgcatcatggtccgactggcttaaataaagcagat
ggtgcaagtcgcgaacacaccacaacccgtctgcccacacataacaagactactactgga
ggaggaagaggaggtggacgagggggatccacaacgcacggcggaggtgagatgggtttg
cccccccacattttgtcacctaaaacacacaatagaacacaacataagttgaggcctcac
ggccgctgggggaaccacacacgcggtgggagtcatggaggaagatcagggagcggtgca
gagggagctggagggggtcacagtcatcctttgcaaccccaccctcctcctttctcagac
aaacacggtcctgtgaaccctcctgacatccacccggttcacgtcgaggtcctccctcgt
ccagcctccgaccccctcctcattatcctgccgctgctggcctgtttgctcctcatcatt
attctcatggttttgatcctggtgttccgccaccgcaaggagaagcagcggctgcggctc
atccaggagctcgctgcggtgacattacctgccgagcgcagcccttacctgggccagcca
gagcggagcatggcgatgccatccgtggtggtcaccccgcttggccctgcaagctgccct
acctcaccgaaggtatccataagttccaggaggaggagtctggccccagggatgaccttc
tgggggccatttgaagctgatggagctgatgggaatatcagaggtggtaacaataatgaa
agagaaaatattactgcaggtttcaagacctctgagggctctaggtcccctgctccatct
cttaaagacaaccagtactgggtttga
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integrated database retrieval system
