Lates calcarifer (barramundi perch): 108886210
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Entry
108886210 CDS
T04895
Name
(RefSeq) alpha-mannosidase 2C1
KO
K01191
alpha-mannosidase [EC:
3.2.1.24
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf00511
Other glycan degradation
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00511 Other glycan degradation
108886210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108886210
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.24 alpha-mannosidase
108886210
Membrane trafficking [BR:
lcf04131
]
Autophagy
Cytoplasm to vacuolar targeting (CVT) pathway
Selective cargos
108886210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_38N
Ams1-like_1st
Glyco_hydro_38C
Alpha-mann_mid
Glyco_hydro38C2
Glyco_hydro_57
Motif
Other DBs
NCBI-GeneID:
108886210
NCBI-ProteinID:
XP_018536467
UniProt:
A0A4W6DGM6
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All DBs
Position
LG10:complement(11739246..11746623)
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AA seq
1017 aa
AA seq
DB search
MYHQPVLKNRRTLLERAEKFISDIYFTDCNLRGRLYGDSCPLVSLTSFLSPKRITFAEAS
KQNFAPYRIGDTFGPTWWTCWFKVTLKIPESWRGKEVHLLWESDGEAMVWRDGQPVQGLT
KEGEKTSYILSDCLKDEEPHSDTLYVEMACNGLFGAGQGSMIAAPDPNKKFSLQRAELVV
FNRNVRELLTDFEMLIDIVKELGEGEQRGYQALFTVNEMVNLCDPANSSSFSKVHNLAQK
FFNQRNGESQHTVHAMGHCHIDSAWLWPYEETIRKCGRSWVTVIRLMERNPEFVFTCSQA
QQFQWVKSWYPGLFSQIQHYVKKGQFIPVGGTWVEMDGNLPSGESMVRQFLEGQRFFNQE
FGVHCKEFWLPDTFGYSAQLPQIMQSCGISNFLTQKLSWNLVNTFPHNTFFWEGLDGSKV
LTHFPPGNSYEMKGKIEDLVRTVKNNKDKGRANHSAALFGFGDGGGGPTQLMLDRLRRVQ
DTDGLPKVQTSSPDQLFSRLQSDSALLCTWSGELFLELHNGTYTTQAQIKRGNRQCETLL
HDVEIASSLALCQDRTFKYPVKKLQELWRLLLLNQFHDVIPGSCIEMVVEDALRYYEDIR
TDGTALLHDAFGALGSKGNSAGVFNSLPWERHEVIETKHGFVLVRVPSVGLSPVKDTQPV
TPVSVTVQADGTILMENGILRTVVNKDGTLASLCLINANREAIYDGCHGNQFVMFDDVPL
YWDAWDVMDYHLQTRKPVLEVVQPAHVVSSGGLRGSVDFTLRISDKSTVTQEIIMDAMCP
YIKFNTEVKWAESHRLLKVEFPVRVHSPNATYEIQFGHLQRPTHRNTSWDWARFEVWGHK
WADLSEHNFGVALLNDCKYGYSVHKNTMTLSLLRAPKAPDANADMGIHHFTYAIMPHSGS
FQDASVIQCAYNLNFPLRLIQCSPDTVPWSAFSVSSEAVILETVKQAEEQKGALVVRLYE
SHGSSVTATLHTTLPVREAFHCDLLERQDPTQPADITSQGLTLKFSPFQIVSLLLIL
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgtatcaccagcctgtgctgaagaacaggcgcactctcctcgagagggcagagaaattt
atctctgatatttatttcacagactgcaatctgagaggacgactctatggagactcttgt
ccgctggtatccctcacctccttcttgtcccctaaacggatcacatttgcagaagcttcc
aagcagaactttgcaccttatcgcattggcgatacctttggaccaacgtggtggacctgc
tggtttaaggtgaccctgaaaatccctgagtcctggagggggaaagaggttcatcttctg
tgggaaagtgatggagaagcaatggtgtggagagatggacagccggttcagggcctgact
aaagagggagaaaagacgagttacatcttatctgactgtctgaaagatgaggagccgcac
agtgacaccctttatgtggagatggcctgtaatgggcttttcggagctggtcaaggttcc
atgattgcagctccagacccgaacaagaagttttccttacagagagctgagctagtggta
tttaaccgcaatgtaagggagctgctgactgattttgagatgcttatcgacattgtgaag
gaactaggcgagggagagcagcgaggctaccaggcgctcttcactgtgaatgagatggtc
aacctctgtgaccccgctaattccagctctttctccaaagttcacaatctggctcagaag
ttcttcaaccagcggaacggagagagccaacacactgtccatgcaatgggtcactgccac
atagactcagcttggctatggccctatgaggagaccattcgcaaatgtggccgaagttgg
gtgacagtaatccgtttaatggaaaggaacccagagtttgtgttcacttgctctcaggcc
cagcaattccagtgggtgaagagctggtacccaggactgttctcccagatccagcattat
gtgaagaaaggccagttcattccagttggaggaacgtgggtcgaaatggatggtaatctg
ccttcaggcgagtccatggtcaggcagttcctggagggccagcgcttcttcaaccaagag
tttggggtccactgcaaagagttctggcttccggatacatttggctactctgcccagctt
cctcagataatgcagagttgtggtatttccaactttttgacacagaagctgagctggaac
ctggtcaacacctttcctcacaacacatttttctgggaaggtctggacggatccaaggtt
ttaacacacttcccaccagggaattcctatgaaatgaaaggcaagattgaagatcttgtg
agaacagtgaagaataacaaagacaaaggcagagctaaccacagtgcggcactgtttggt
tttggtgatggcgggggcgggcctacgcagctgatgctagacagactgcgtcgggttcag
gacactgatgggcttccaaaagtccagacatctagtcctgaccagcttttctctcggctt
cagtctgactcagccttgctgtgcacttggagcggagagctgtttttggaactacacaat
ggcacatacaccacacaggcacagatcaaacgtgggaaccgccagtgtgagaccctcctt
catgatgtggagatcgccagcagcttggcactgtgccaggacaggacattcaagtatcct
gtgaaaaaactgcaggagctatggaggctgctccttctgaaccagtttcatgatgtgatc
cctggcagctgtatagagatggttgtggaggatgcactgcggtattatgaagacatccgc
actgatggtactgcactactgcatgatgcattcggagccctggggtcaaaaggaaacagt
gctggtgtgttcaactctctgccatgggagcgccatgaggtcattgagactaaacatggt
tttgttctggtgagagttcccagtgtcggtttatctcctgtcaaagacacgcagcctgtg
actccggtctctgtcacagttcaggctgatggcaccatcctcatggagaacgggatttta
cggactgtcgtgaacaaagatggcactttggcgtcactgtgtttgatcaatgcaaacaga
gaagccatctatgacggctgtcatgggaaccagtttgtcatgtttgatgatgtcccactg
tactgggatgcttgggatgtcatggactaccatcttcagacgaggaagccggtgctggag
gtggtgcagcctgctcacgtggtgtcctcaggtgggctgagaggcagtgtggacttcacc
ctcagaatcagtgataaaagcacagtcacgcaggagattatcatggatgccatgtgccct
tacatcaaatttaacacagaggtgaagtgggcagagtcacacaggttgctcaaggtggaa
ttccctgtgcgagtgcacagccccaatgctacatatgagatccagtttggccatctgcag
agacccacacacaggaacacttcatgggactgggccagatttgaggtttggggtcacaag
tgggccgacctgtcagagcacaactttggagttgcactgctgaatgactgcaaatatggc
tactcagtccacaagaacacgatgacgctgtccctactgagagcacctaaggccccagat
gccaacgctgacatggggattcaccatttcacctatgcgatcatgccacactcaggatcc
ttccaagatgcctcagtaatccagtgcgcctacaacctgaatttccctctgaggttaatt
cagtgctctcctgacactgtgccctggagtgctttttccgtcagcagcgaggcagtcatc
ctcgagacagttaaacaggctgaagagcagaagggggcacttgtggtccggctctatgag
tcacatgggagttctgtgactgcaactctccacaccacccttcctgtgagggaagccttt
cattgtgacctcttggagagacaggaccccacccaaccagcagacattacatcacaggga
ctgactctgaaattcagtccctttcaaattgtgtctcttctccttattctgtga
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