Lates calcarifer (barramundi perch): 108886239
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Entry
108886239 CDS
T04895
Name
(RefSeq) nucleolysin TIAR isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcf03019
]
108886239
03041 Spliceosome [BR:
lcf03041
]
108886239
Messenger RNA biogenesis [BR:
lcf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
108886239
Spliceosome [BR:
lcf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
108886239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Nup35_RRM_2
Nup35_RRM
Calcipressin
XOO_2897-deam
Toxin-deaminase
Motif
Other DBs
NCBI-GeneID:
108886239
NCBI-ProteinID:
XP_018536493
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Position
LG16_LG22:2104767..2114082
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AA seq
375 aa
AA seq
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MDDESHPKTLYVGNLSRDVTEILILQLFTQIGPCKSCKMITEHTSNDPYCFVEFFEHRDA
AAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDVKAAFAPFG
KISDARVVKDMATGKSKGYGFVSFYNKLDAENAIINMGGQWLGGRQIRTNWATRKPPAPK
SAQDNGSKQLRFDDVVTQSSPQNCTVYCGGIQSGLSEHLMRQTFSPFGQIMEIRVFPEKG
YSFIRFSSHDSAAHAIVSVNGTAIEGHMVKCFWGKESPDMAKNPQQVEYSQWGQWNQLYG
SPQQQYGQYVTNGWQVPSYSMYGQTWNQQGFGVEQSQSPAWMGNFGSPSAQAAAAPPGPV
MSNLANFSMAGYQTQ
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
atggacgacgaaagccaccccaaaaccctgtatgtgggaaacctctccagggatgtgaca
gaaattttgattctgcaactcttcacccagataggaccttgcaaaagttgtaaaatgatc
acagagcacacaagcaatgacccctattgctttgtggagttctttgaacacagggatgct
gctgcagcccttgcagccatgaacgggaggaagatattaggaaaggaggtcaaagtaaat
tgggccaccactccaagtagccagaagaaagacacttccaatcacttccatgtttttgtg
ggtgatttgagccctgagattaccactgaggatgtcaaggctgcatttgcaccttttggg
aaaatctcggatgcccgtgttgtgaaggacatggcgacaggaaaatcaaaggggtatgga
tttgtgtccttctacaacaaactggatgcagagaacgccatcattaacatgggtggacag
tggcttggaggacgccaaatcaggacaaactgggcaacacgtaaaccacctgctccgaag
agcgcccaggacaacggctcaaagcagctgaggtttgacgacgtagtgactcagtccagt
ccacagaactgcaccgtgtactgtggagggatccagtcaggattatcagaacacctcatg
cgacagaccttctcaccttttggtcagataatggagatcagggttttcccagagaaagga
tactctttcatcaggttttcctcccatgacagtgccgcccacgccattgtttcagtaaat
ggcacagccattgaagggcacatggtgaagtgcttctggggcaaagaatctcctgacatg
gcaaaaaatccacaacaggttgagtacagtcagtggggacagtggaaccagctctatgga
agtccacagcagcagtatgggcagtatgtgaccaatgggtggcaagttccctcctacagc
atgtacggccagacgtggaaccagcagggattcggtgtagagcagtcccagtccccggcc
tggatgggaaactttggatctccgtcagcccaggccgccgcagccccacctggtccagtc
atgtccaacctggccaacttcagcatggctggctaccaaacgcagtga
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