Lates calcarifer (barramundi perch): 108886250
Help
Entry
108886250 CDS
T04895
Name
(RefSeq) chondroitin sulfate N-acetylgalactosaminyltransferase 2
KO
K00746
chondroitin sulfate N-acetylgalactosaminyltransferase 1/2 [EC:
2.4.1.174
2.4.1.175
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf00532
Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
lcf01100
Metabolic pathways
Module
lcf_M00058
Glycosaminoglycan biosynthesis, chondroitin sulfate backbone
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
108886250
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
lcf01003
]
108886250
Enzymes [BR:
lcf01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.174 glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase
108886250
2.4.1.175 glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase
108886250
Glycosyltransferases [BR:
lcf01003
]
Glycan extension
O-Glycan
108886250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CHGN
Glyco_transf_7C
Glyco_tranf_2_2
Motif
Other DBs
NCBI-GeneID:
108886250
NCBI-ProteinID:
XP_018536503
UniProt:
A0A4W6CXZ2
LinkDB
All DBs
Position
LG16_LG22:2063367..2068809
Genome browser
AA seq
539 aa
AA seq
DB search
MPRRGLPLQGRVRWLFLGLFLLLVLLLFAYLLECTPPADVSLVLPGLAGESYGKEYYQAL
LQEQEERHLNRAASLKRQIAQLKQELQEMSEKLKLLQDKKELPGVQGLTETKDQEPGDLL
EYLHSQIDKAEVNTGARLPSEYALVPFESFTSSKVYQLEMGLTRHPEEKPVRKDRRDELV
EVIEAALDIINNPDEEDGVEDDMPMQRLTYTEGHFTEGLYRTERDKGTLYELFFAKEDSS
SFRHVTLFRPFGPLMKVRSTSVETSGMIINIIVPLAGRVETFTQFLHNFREVCIQQDRRV
HLTVVYFGQEGLQEAKSSLEKMSREESFSNYTLIPVDEEFSRGRGLDIGAHAWKRGDVLM
FFCDVDIHFTLEFLNTCRLHAAPNKKVFYPVVFSLYNPAIVYGNMELAPPIELQLIHKKD
AGFWRDFGFGMTCQYRSDFLNIGGFDLEVKGWGVEDVHLYRKYLRSDLIVIRTPVSGLFH
LWHEKQCADELTPEQYRMCIQSKAMNEASHSHLGMLVFREEIEAHLRKQAFKTQSKAED
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgcccaggcgggggttgccgctccagggccgggttcgctggctcttcctggggctcttc
ctgctgctggtgctgctgctgttcgcgtacctgctggagtgcacccctccggcggacgtc
agcctggtcctgcccggcctggcgggagagagctacgggaaggagtattaccaggccctg
ctgcaggagcaggaggagcgccacctgaaccgcgccgccagcctcaagcggcagatcgct
cagctcaagcaggagctgcaggaaatgagcgagaagctgaagctcctgcaggacaagaag
gagctgcccggggtgcagggcctgaccgagactaaggaccaggagccgggggatctgctg
gagtacctgcactctcagatcgacaaagccgaggtcaacacgggggcgcgcctgcccagc
gagtacgccctggtgcccttcgagagtttcacctcatccaaggtgtaccagctggagatg
gggctgacgcggcacccggaggagaaacccgtccgcaaagaccgcagggacgagctggtg
gaggtcatcgaggccgcgctggacatcatcaacaacccggacgaggaggacggcgtggag
gacgacatgccgatgcagagactcacctacaccgagggtcacttcactgagggactttac
aggacagagcgagacaaagggacgctttacgagctgttctttgccaaagaggattccagc
agcttccgccacgtcacgctcttcaggccctttggtcccttaatgaaagtcaggagcaca
tctgtagaaacatcaggaatgattattaacatcatcgtgccgctggcgggcagagtagaa
actttcacacagttcttacacaacttcagggaggtgtgcattcagcaggacagacgagtg
catctcacagtggtttattttgggcaggagggcctacaggaggcaaagtcatcattggaa
aaaatgtcaagggaggagagcttctccaattacaccctgattccagtggacgaggagttt
tccagaggtcggggtctggatatcggagcccacgcctggaagagaggcgacgtcctgatg
tttttttgtgatgtcgacatccatttcacactggagttcctcaacacctgtcgactccac
gccgccccgaacaagaaagtcttctacccagtggtgttcagtctgtacaatcctgccata
gtctacggaaatatggagctggctccacccattgaactccaactgattcacaaaaaagat
gctggattctggagagattttgggtttggaatgacgtgtcagtatcgctcagatttcctg
aacatcggagggtttgatctcgaggtgaaaggctggggcgtggaggacgtccacctgtac
aggaagtacctccggagcgacctgatcgtgatccggacccccgtgtccggcctcttccac
ctgtggcacgagaagcagtgcgcggacgagctgacgccggagcagtaccgcatgtgcatc
cagtccaaagccatgaacgaggcctcgcactcccacctgggcatgctggtgttccgcgag
gagatcgaggctcacctgcgcaaacaggccttcaagactcagagcaaagccgaggactga
DBGET
integrated database retrieval system
