Lates calcarifer (barramundi perch): 108886258
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Entry
108886258 CDS
T04895
Name
(RefSeq) sorbin and SH3 domain-containing protein 1
KO
K06086
sorbin and SH3 domain containing protein 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03320
PPAR signaling pathway
lcf04520
Adherens junction
lcf04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
108886258
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
108886258
03320 PPAR signaling pathway
108886258
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
108886258
Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
Src homology (SH) domain-containing proteins
Other SH2 and SH3-containing proteins
108886258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH3_9
SH3_1
SH3_2
Sorb
Motif
Other DBs
NCBI-GeneID:
108886258
NCBI-ProteinID:
XP_050932766
UniProt:
A0AAJ8BIA2
LinkDB
All DBs
Position
LG16_LG22:1949408..1991053
Genome browser
AA seq
1468 aa
AA seq
DB search
MKGSPDLIPAADLDPSRVCKGKGVVTLRATLVHIDDEGCISEEPNVITAPSGWTSQINGD
SSKAGLAEGGSNITADLPPVNNTQCQANSPESLKENQAPSSTDFQNCITSSSSVYPSTST
VNPTIVLLQHNRDPTPERDKSPDPGRDSVSPVPDMDGKRLRLSLHSPVLSPLNKPIVPVR
NTEKSKDWYKTMFKQIHKIPEPIEENPYRPTYIFPENIDIQMKSKDDGPTPFGYLEDVKP
VPRSKSDAAVDSRARSMPVPTRSSSLRPTTKRNEWEPPDKKVDTRKYRAEPKSIFEYEPG
KSSVLKLERTTQDVSPEDVDLENEPWYKFFSEMEFDKASAPSFSPLETASDLQQYSSSKS
GHSEVEKDRGSSTGEPAAPECDRHVYKSVLEGGDIPLQGLRALNKRHGSSSSSKVDYKGG
NGYIISPCSSVNSRSVLASNAIGNQCKSKKPLSAAKACIPQILPSKFKPKLLPPSGDSQE
SRTKAVRHPKAHSCEDLYTGPCDSDFAGAEETESGQCSDSKSSCGGECTDGLRNVSPAIR
RSTSEFSSLYRSMHHIQRPSSVGCSPHGSVRSLASLFEKTKADGGERSEGEDGDNIPRDA
VSSRVNEFEMIIQRSSSAPSRSSSLPTLNSSHSHSPDHVPAHLYMASAVSAESLLVADAA
QTDACSPPEAEGKSSGEEAVSPSSVAVEEAASSSDDGHNIRAESPSNTEAEVEQIFSKGS
PELIHQNDGASKSPVARLTASPPQHNHLHHHHHLLHHLNHQLLLKPSKCKGSCPASYTRF
TTILRHERQQATTQQERLPPPEKKTTLPGNLFLMGPTPFRPRRNLQSQQTRRTLLATKVT
MSTQRPCSLSPEPRPLIPQRLSSLEVLERLSNGEGGNTDHLSNGQGLDANGNLLQPLAAH
RRDSSPAHGESQDEVLRRRHGDKEKILEEQRRLKREQEEADTASRRHTGIVPTHHQFITN
ERFGDLLNITDNTDKRKSGVERTPAMARFDFRAETLKELPFQKGDIVYIIRQVDQNWFEG
EHHGRVGIFPRSYVELLPPTEKAQPKKSAPVQVLEYGEAVARFNFTGDTVVEMSFRKGER
ITLIRRVDENWYEGKISGTNRQGIFPVTYVEVHKRPRVKNGVEYPDPPVSQSPQRSTNAS
PQLYRNRLTTSPLPLPRSPRRSVSPEVHAVSSEWISLTVGGGSPPAAPTPPLPPLPTVSY
RCGEYLPPPFSASPVPPITGSPYCVSPMASPSVSPLPPPYPPRPSSTTPFLTFTPPQGED
FLLSPPSQRLSRSVSPCGGPVLEGWLRGEKELTEGEGTEGDRGRAARGSRRNSPAEFVKN
EADHHGRSSRSPVMLFDIQDNNNVNSFAEAVCNEILNIAETSVRYCSTLSHHPHDSVHRL
HPHPSKQSFIISQQPQSHSSSPEPGRLSCGIFQALYSYVPQNDDELELQEGDLVSVMEKC
DDGWFVGTSKRTKQFGTFPGNYVKEVKL
NT seq
4407 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggctctcctgacctgattcctgccgcagatctggaccccagcagagtgtgcaag
gggaaaggagtcgtgactctacgggccaccctcgtccacatagatgatgagggctgcatc
agcgaggagccaaacgtcatcacagcgccaagtggctggacaagccagattaatggagac
agctctaaagcaggattggctgagggaggcagcaacatcacagctgatttaccccctgta
aacaacactcagtgccaggccaactcaccagaaagcctaaaagaaaaccaggctccttcc
tccactgactttcagaactgcatcacatcgtccagctccgtctaccccagcacgagcaca
gttaaccccaccatagtcctgctgcagcacaacagagacccaactccagaacgggacaaa
agccccgatcctggcagagactcagtgagtcctgtccctgatatggacgggaagaggctg
cgactatcactgcactcccctgtcctcagtcctctcaacaagcccattgtgcctgtacgg
aacactgaaaagtccaaagactggtataagacaatgttcaaacagatacacaaaataccc
gagcctattgaggaaaacccttaccgccccacctacattttccccgagaacattgacatt
cagatgaaatcaaaagatgatggtcccactccctttggttacttggaggatgtgaaaccg
gtcccacgctcgaaaagcgacgccgcggtcgattcgagagcccggtcgatgccggtgccg
acacggtcctcttccctcagacccaccaccaaaaggaacgagtgggagcccccggataag
aaggtagacaccaggaagtaccgcgccgagcccaagagcatctttgaatacgagccgggg
aaatcgtcggtgctgaagctggagagaacgactcaggatgtaagtccagaagatgtagat
ttagagaatgagccttggtataaattcttttcagagatggagtttgacaaagcgagtgcc
ccctctttcagccccctggaaacagcctccgacctgcagcagtactcctcgagcaagtcc
ggacacagcgaggtggagaaggacagaggatcatccacaggcgagcccgcggctccagaa
tgcgaccgccatgtttacaagagcgtcctggagggcggcgacattcccttacaaggtcta
cgggccctaaacaagcgccacggcagctcctcctcctctaaagtggattataaaggtggg
aatggctatataatttcaccctgctcctctgtaaatagtcgatcggttcttgccagtaat
gcaataggtaaccagtgtaagagtaagaagcctctctctgctgccaaagcctgcataccc
caaatcctgccttctaagttcaagcccaagctgctgccgcccagtggtgacagtcaggag
agcaggactaaagctgtcaggcacccaaaggcccacagctgcgaggacctgtacaccggg
ccatgtgactcggactttgccggagcagaggagacggagagcggtcagtgctcggactcc
aagtccagctgtggcggcgagtgcacggacggcctcaggaatgtttcccccgccatcagg
aggagcacgtccgagttttccagcctgtacaggagcatgcatcacatccagaggcccagc
tcggtcggctgcagcccccacggcagcgtccggagcctggcctccctttttgagaagacg
aaggccgacgggggcgagaggtcagagggcgaggacggggataacattccacgggatgcg
gtgtcgtcacgggtcaacgagtttgaaatgatcatccagaggtccagctcggcgcccagc
cgctcctcctccctgcccaccctgaactccagccacagccacagccccgaccacgtcccc
gcccacctctacatggcgtctgcggtgtcagcagagtccctcctggtggccgacgccgcc
cagacggatgcctgctccccaccggaggcagagggcaagagctccggggaggaggccgtg
tcgccgagcagcgtggcggtggaggaggccgcttcctcctcggatgacggacacaacatc
agggctgagtcgccgtccaacactgaggccgaggtcgagcagatcttcagtaaaggctcc
ccagaactgatccaccaaaacgacggcgcatcaaagagtccggtagcacggctcacagcg
tccccaccgcaacacaaccacctccaccaccaccaccacctcctgcaccacctgaaccac
cagctcctcctcaaacccagcaaatgcaaaggctcctgcccggcctcctacacccgcttc
accaccatcctcaggcacgagaggcagcaggccacgacccaacaggagaggctgccgccc
ccggagaagaagaccacgctgcccggaaacctcttcctcatgggccccactcccttcagg
ccgcgtaggaacctgcagtcccagcagactcggagaaccctgttagccaccaaggtgact
atgagcacccagaggccctgcagcctctcccccgagcccaggcctctgatccctcagcgc
ctgtcctccctggaggtcttggagaggctgagtaacggagaaggaggcaacactgaccac
ctgagtaacgggcagggcttggacgccaacgggaacctactgcagccgctggcagctcac
cgcagagactcgtccccagctcacggggagagccaggatgaagtgctgcggaggcgtcac
ggggacaaagagaaaatcttggaggagcagcggcggctgaagcgggaacaggaagaggct
gacacggcgtcgaggcgacacacaggcatcgtcccgacgcaccaccagttcatcaccaac
gagcgcttcggagacctgctcaacatcacagataacacagacaaaaggaaatcgggcgtt
gagagaactccagccatggctcgctttgacttcagagcagaaactctaaaggagttaccg
tttcaaaagggagacatcgtgtacatcattcgacaggtggatcagaactggttcgaaggg
gaacatcacggaagagtcgggattttccctcgaagttacgttgagctccttccccccaca
gaaaaagcccagccaaagaaaagtgccccagttcaggtcctggaatacggcgaggccgtc
gcccgcttcaacttcaccggggacacagtggtggagatgtccttcaggaagggagagagg
atcacgctaatccgtcgagtcgatgagaactggtacgaaggcaaaatctcaggcaccaac
cgccaaggcatcttccccgtcacctacgtagaagtgcacaaaagaccccgcgtcaaaaac
ggcgtggagtatcccgaccctcccgtcagccagtcgccacagcgcagcaccaacgcctct
cctcagctgtatcgtaatcgcctcaccacctcccccctgcccctccctcgctccccccgc
cgctccgtgtcccccgaggtccacgccgtctcctccgagtggatctccctgacggtggga
ggagggagcccccccgccgcccctacccctcccctgccgccgctgcccaccgtgtcctac
cgctgcggcgagtacctgcccccgcctttctccgccagccccgtgcctcccatcaccggc
agcccgtactgcgtctcccccatggcctccccgtccgtctcccccctgcccccgccgtac
ccgcccagacccagctccaccacccccttcctcacattcaccccgccgcagggcgaggac
ttcctgctctccccgccctcccagcggctgtctcgcagcgtcagcccctgcggcgggccg
gtgctggagggctggctgaggggggagaaggagttgacagagggggaaggcacagagggg
gacaggggccgcgcagcccggggcagcaggcgaaatagccctgcagagtttgtgaagaat
gaagccgaccatcatgggcggagctccaggagccctgtgatgctgtttgacatccaggat
aacaacaatgttaactcatttgcggaggcagtgtgtaatgagatcttgaatatagctgag
acctcggtgaggtactgcagcaccctgtcccaccaccctcatgactctgtccatagactg
cacccccaccctagtaaacaatctttcatcatttcccagcaaccccagtcccacagcagc
agtccggagccgggtcgtctcagctgtggaattttccaggctctgtacagttacgtgccg
cagaacgacgacgagctggagctgcaggagggcgacctcgtcagcgtcatggagaagtgc
gatgacggctggtttgtcggaacctcgaagaggacaaaacagtttgggactttcccgggg
aattacgtgaaggaggtgaaactgtaa
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