Lates calcarifer (barramundi perch): 108886276
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Entry
108886276 CDS
T04895
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108886276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcf03021
]
108886276
Enzymes [BR:
lcf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108886276
Transcription machinery [BR:
lcf03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
108886276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
108886276
NCBI-ProteinID:
XP_018536539
UniProt:
A0A4W6D232
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All DBs
Position
LG16_LG22:complement(1587574..1594527)
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AA seq
1134 aa
AA seq
DB search
MDFSAKWSNLPKAPSLKNLTQGGFGVLKETQHAAVQDLTKAHIESFDQAVTDGLSRVVQA
IPPLEFMVKNDRISLSFVEATIYNPVVSKGSICREMRVFPAECRGRRCSYKGKLVADVSW
SVNGVPKGIIKQSLGQVPIMVKSKLCNLHGMSPKELVEHREEAEEMGGYFIVNGIEKVIR
MLIMPRRNYPIAMSRPKWKSRGQGYTQYGISMHCVREEHTAINMNLHYLENGTVMLNFIY
QKELFFLPLGFALKALVDFTDFQIYQELIKGREDNSFYKSCASEMLRIVSEEGCTTRSKV
LNYLGERFRVKMNLPEWYTNEQCANFLMDECICIHLKSDVEKFYLLCLMTRKLFTFAKQE
CMEENPDSIMCQEVLTPGQLYLMFLKERLAAWLVSVKLSFDKRGSRLSAGLSPENMMKIF
NMGSDVTKSFEYLLATGNLNSKTGLGMLQNTGLCVVADKLNFIRYLSHFRCVHRGAAFAK
MRTTSVRKLLPESWGFLCPVHTPDGEPCGLMNHMTASCEIVAPTLPTTSLPALLCSLGVT
PVDGSPGQPFSDCYPVVLDGAFVGWLEAELAPGVVDSLRRFKVLREKKIPPWTEIVLVPK
TGKASLYPGLFLFTTPCRMMRPVRNLALGKQELIGTFEQLYINVGILEDEIEPGVTTHQE
LFPHSMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHSFMDRSDNKLYRLQTPQSP
LVRPYMYDHYNLDNYPSGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSIYKTELVD
LGEKVRGDDSVVFGFKPGDPKVNGKLDADGLPHIGSTLQYGDPFYSYINLNTGQTFINYY
KSQEACVVDNVKICSNDTGSGRFKRVCITIRIPRNPTIGDKFASRHGQKGILSRLWPTED
MPFTESGMTPDILFNPHGFPSRMTIGMLIESMAGKSGALHGLSHDATPFTFSEENSALEY
FGEMLRVGGYNYYGTERLYSGLSGQELEADIFIGVVYYQRLRHMVSDKFQVRTTGVRDKV
TNQPVGGRNVQGGIRFGEMERDALLAHGSSFLLHDRLFNCSDRSVAQVCVDCGSLLSPLL
EKPPPYWSAMRHRKTVCTLCGKSDSIDSVSVPYVFRYFVAELAAMNIKVKLDVK
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggatttctcagcaaagtggagtaatttacctaaagctcccagtctgaagaacctgaca
cagggagggtttggagtcctgaaggagactcaacatgccgccgttcaggatttaaccaaa
gctcacatcgagtcgtttgaccaggctgtcactgacggactcagccgcgttgtacaggcc
atccctcccttggagttcatggtaaaaaatgacaggatcagcctttcgttcgtcgaagcc
acgatctacaacccggtggtcagcaaaggcagcatctgcagggagatgagggtgtttccg
gcagagtgcaggggaagaagatgctcgtacaaaggaaaactggtggcagacgtgagctgg
tcggtcaacggcgtccctaaaggcatcatcaaacagtccctgggtcaggtgccgatcatg
gtgaagtccaagctgtgtaacctccacggtatgtcgccgaaggagctcgtcgaacaccgt
gaagaagcagaggaaatgggaggttatttcatcgtgaacggaatcgagaaggttatccga
atgctgatcatgccgaggaggaactaccccatcgccatgtccagacctaagtggaagagc
agaggccagggatacactcaatatggtatttctatgcattgtgtgagggaggaacacaca
gccatcaacatgaacctgcattacctggaaaacgggaccgtgatgctgaactttatctac
cagaaagaactcttcttcctcccactaggctttgccctcaaggctttagtggacttcaca
gacttccagatataccaggagctgataaaaggccgcgaggacaactccttctacaagagc
tgtgcgtcggagatgctgcgtattgtctcggaggagggctgcaccacccgcagcaaggtg
ctcaactacctgggagagcgcttcagggttaaaatgaaccttcctgagtggtacacgaac
gagcagtgtgccaactttctgatggacgagtgcatctgcatccacctgaagtcagatgtg
gagaagttctacctgctctgtctcatgacgaggaagcttttcacgttcgccaagcaggag
tgcatggaggagaaccctgacagcatcatgtgtcaggaggtgctcactcccggtcagctc
tacctcatgtttttgaaggagagactggctgcctggttggtgtctgtgaagctgtccttt
gacaagagaggcagcagactgagtgcaggactgagccctgaaaacatgatgaagatattc
aacatgggcagtgatgtgaccaaatcctttgaatacctcctggccacggggaacctcaac
tccaagacaggtctgggcatgctgcagaacactggcctgtgtgttgtagccgacaagctc
aacttcatccgctacctctcccacttccgctgcgtgcacagaggagcggcgttcgccaag
atgaggaccacgtctgttcgtaagctgctgcccgagtcctggggcttcctgtgtcccgtc
cacaccccagacggagagccctgcggcctcatgaaccacatgacggccagctgcgagatt
gtggcaccaacgctgcccaccacatccctgcctgctctgctctgctcgcttggtgttact
cctgtggatggatctcctggtcagcccttctcagactgctaccccgttgtcctcgatggg
gcttttgttggctggttggaggctgaattagccccaggcgtggtggattcactgcgcagg
ttcaaggtgctcagagagaagaagatccccccttggactgagatcgttctggttcccaaa
accgggaaggccagcttgtacccgggcctgttcctcttcacgacaccctgccgtatgatg
cggcccgtacgcaacttagctctcggaaagcaggagttgattggtacttttgaacaactt
tacatcaacgtcggcatcctggaggacgagatcgagccgggagtgaccacacaccaggag
ctcttccctcacagcatgctgagcgtggtggcgaacttcatcccctactccgaccacaac
cagagtcccaggaacatgtaccagtgtcagatgggtaaacagacgatgggtttccccctg
cactcgttcatggatcgctccgataacaagctgtaccggctccagaccccacagagcccg
ctggtcaggccctacatgtacgaccactacaacctggacaactaccccagcggcacaaac
gccattgtggctgtcatatcctacacaggctacgacatggaagatgctatgatcgtgaac
aagtcgtcgtgggagagaggcttcgcccacgggagtatctataagactgagctggtggat
ctgggggagaaggtgaggggagatgacagcgtggtgtttgggttcaaaccaggtgacccc
aaagtgaacggcaagctggacgccgatggactgcctcacatcgggtcaacgcttcagtac
ggagacccgttctacagctacatcaacctcaacaccggccagaccttcatcaactactac
aagagccaagaggcctgtgtagtcgacaacgtaaagatctgcagcaacgacaccggctca
ggccgctttaaacgagtctgcatcaccatacgaattccacgaaaccccaccattggagac
aagttcgccagtcgccacggtcagaagggaatcctgagccgcctgtggccgaccgaggac
atgcccttcacggagagcggcatgactccggacatcctcttcaacccgcacggcttcccc
tcccgcatgaccatcgggatgctgatcgagagcatggccggcaagtcgggtgccctgcac
ggcctgagccacgacgccacgcccttcaccttctccgaggagaactccgcactggagtac
ttcggcgagatgctccgggtcggtggctacaactactacggcacggagcgcctctacagt
gggctgagtggccaggagctggaggccgacatcttcatcggagtcgtctactaccagcgg
ctgcgtcacatggtctccgacaagttccaggtgaggaccacaggagtgcgagacaaggtg
accaaccagccggtgggagggaggaacgtccagggaggcatccgttttggggagatggag
cgagacgcgctgctggctcacggatcctccttcctcctccacgatcgactcttcaactgc
tcggaccggtcggtagctcaggtgtgcgtcgactgcggcagcctcctctcacctctgttg
gagaagccgccgccgtactggtcggccatgcgccaccggaagactgtgtgcaccctgtgc
ggcaaaagtgactctatcgactccgtgtctgttccttatgtcttccgttattttgtcgcc
gagctcgcagcgatgaacatcaaagtcaaattagacgttaagtga
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